biblio_tagged.module in Bibliography Module 7.2

File

modules/endnote/biblio_tagged.module

<?php

/*
 * @file biblio_tagged.module
 *
 */
function biblio_tagged_views_api() {
  return array(
    'api' => 2,
    'path' => drupal_get_path('module', 'biblio_tagged') . '/views',
  );
}

/*
 *   add the tagged option to the option list of the biblio_import_form
 *   the key is the module name use by module_invoke to call hook_biblio_import
 *   module_invoke('biblio_tagged', 'biblio_import',...)
 */
function biblio_tagged_biblio_import_options() {
  return array(
    'biblio_tagged' => t('EndNote Tagged'),
  );
}
function biblio_tagged_biblio_mapper_options() {
  return array(
    'tagged' => array(
      'title' => t('EndNote Tagged'),
      'export' => TRUE,
    ),
  );
}
function biblio_tagged_biblio_export_options() {
  return array(
    'tagged' => t('EndNote Tagged'),
  );
}
function biblio_tagged_node_view($node, $view_mode) {
  if ($node->type == 'biblio') {
    switch ($view_mode) {
      case 'full':
      case 'teaser':
        $links = biblio_tagged_biblio_export_link($node->nid);
        $node->content['links']['biblio_tagged'] = array(
          '#links' => $links,
          '#attributes' => array(
            'class' => array(
              'links',
              'inline',
            ),
          ),
        );
    }
  }
}

/**
 * Creates a link to export a node (or view) in tagged format
 *
 * @param $base this is the base url (defaults to /biblio)
 * @param $nid  the node id, if NULL then the current view is exported
 * @return  a link (<a href=...>tagged</a>)
 */
function biblio_tagged_biblio_export_link($nid = NULL, $filter = array()) {
  $show_link = variable_get('biblio_export_links', array(
    'tagged' => TRUE,
  ));
  if (!isset($show_link['tagged']) || empty($show_link['tagged']) || !biblio_access('export')) {
    return array();
  }
  $base = variable_get('biblio_base', 'biblio');
  if (module_exists('popups') && !empty($nid)) {
    $link = array(
      'attributes' => array(
        'class' => 'popups',
        'title' => t("Click to get the EndNote Tagged output"),
      ),
    );
  }
  else {
    $link = array(
      'attributes' => array(
        'title' => t("Click to download the EndNote Tagged formatted file"),
      ),
    );
  }
  $link['href'] = "{$base}/export/tagged";
  if (!empty($nid)) {
    $link['href'] .= '/' . $nid;
  }
  $link['title'] = t('Tagged');
  if (empty($nid) && !empty($filter)) {

    // add any filters which may be on the current page
    $link['query'] = $filter;
  }
  return array(
    'biblio_tagged' => $link,
  );
}
function biblio_tagged_node_delete($node) {
  if ($node->type != 'biblio') {
    return;
  }
  db_delete('biblio_tagged')
    ->condition('nid', $node->nid)
    ->execute();
}
function biblio_tagged_node_insert($node) {
  if ($node->type != 'biblio' || !isset($node->biblio_tagged_md5)) {
    return;
  }
  drupal_write_record('biblio_tagged', $node);
}
function biblio_tagged_biblio_import($file, $terms = array(), $batch = FALSE, $session_id = NULL, $save = TRUE, $string = FALSE) {
  $nids = array();
  $dups = array();
  list($nids, $dups) = _biblio_tagged_import($file, $terms, $batch, $session_id);
  return array(
    $nids,
    $dups,
  );
}
function biblio_tagged_biblio_export($nids) {
  if (module_exists('popups') && count($nids)) {
    $popup = TRUE;
  }
  else {
    $popup = FALSE;
    drupal_add_http_header('Content-type', 'application/x-endnote-refer');
    drupal_add_http_header('Content-Disposition', 'attachment; filename="Drupal-Biblio.enw"');
  }
  $nodes = node_load_multiple($nids, array(), TRUE);
  foreach ($nodes as $node) {
    if (variable_get('biblio_hide_bibtex_braces', 0)) {
      $node->title = biblio_remove_brace($node->title);
    }
    if (!$popup) {
      print _biblio_tagged_export($node);
    }
    else {
      $popup_data .= _biblio_tagged_export($node);
    }
  }
  if ($popup && !empty($popup_data)) {
    return '<pre>' . $popup_data . '</pre>';
  }
}

/**
 * Export data in tagged format.
 *
 * @param $result
 *   a database result set pointer
 * @return
 *   none
 */
function _biblio_tagged_import($file, $terms = array(), $batch = FALSE, $session_id = NULL) {
  ini_set('auto_detect_line_endings', true);
  if (!($fp = fopen($file->uri, "r"))) {
    drupal_set_message(t("Could not open EndNote Tagged input"), 'error');
    return;
  }
  $nids = array();
  $dups = array();
  $ignored_tags = array();
  $node = NULL;
  $incite = FALSE;
  $node_id = NULL;
  $contributors = NULL;
  while (!feof($fp)) {
    $line = trim(fgets($fp));
    $line_len = strlen($line);
    if ($line_len) {
      $start = strpos($line, "%");

      // There could be some unprintables at the beginning of the line so fine the location of the %
      if ($start !== FALSE) {
        $tag = drupal_substr($line, $start, 2);
        $value = trim(drupal_substr($line, $start + 3));
      }
      else {
        $value = $line;
      }
    }
    if ($line_len) {

      // if this is not a blank line
      if (!$incite) {
        $incite = TRUE;
        $node = new stdClass();

        //$node->biblio_contributors = array();
      }
      switch ($tag) {
        case '%0':
          $node->biblio_type = _biblio_tagged_type_map($value);
          break;
        case '%A':
          $node->biblio_contributors[] = array(
            'name' => $value,
            'auth_category' => 1,
            'auth_type' => _biblio_get_auth_type(1, $node->biblio_type),
          );
          break;
        case '%E':
          $node->biblio_contributors[] = array(
            'name' => $value,
            'auth_category' => 2,
            'auth_type' => _biblio_get_auth_type(2, $node->biblio_type),
          );
          break;
        case '%T':
          $node->title = $value;
          break;
        case '%Y':
          $node->biblio_contributors[] = array(
            'name' => $value,
            'auth_category' => 3,
            'auth_type' => _biblio_get_auth_type(3, $node->biblio_type),
          );
          break;
        case '%?':
          $node->biblio_contributors[] = array(
            'name' => $value,
            'auth_category' => 4,
            'auth_type' => _biblio_get_auth_type(4, $node->biblio_type),
          );
          break;
        case '%X':
          $node->biblio_abst_e .= $value;
          break;
        case '%Z':
          $node->biblio_notes .= $value;
          break;
        default:
          $field = _biblio_tagged_field_map($tag);
          if (!empty($field)) {
            $node->{$field} = $value;
          }
          else {
            if (!in_array($tag, $ignored_tags)) {
              $ignored_tags[] = $tag;
            }
          }
          break;
      }

      //end switch
    }
    else {
      $incite = FALSE;
      if (!empty($node)) {
        _biblio_tagged_save($node, $terms, $batch, $session_id, $nids, $dups);
        $node = NULL;
      }
    }

    // end if ($start !== FALSE)
  }

  // end while
  fclose($fp);
  if ($incite && !empty($node)) {

    // this catches the case where the file ends without a blank line at the end
    _biblio_tagged_save($node, $terms, $batch, $session_id, $nids, $dups);
  }
  if (!empty($ignored_tags)) {
    $ignored_tags = array_unique($ignored_tags);
    $message = t("The following elements were ignored because they do not map to any biblio fields: ");
    $message .= implode(', ', $ignored_tags);
    if (user_access('administer biblio')) {
      $message .= '. ' . t('Click !url if you wish to check the field mapping', array(
        '!url' => l(t('here'), 'admin/config/content/biblio/iomap/edit/tagged'),
      ));
    }
    drupal_set_message($message, 'warning');
  }
  return array(
    $nids,
    $dups,
  );
}
function _biblio_tagged_save($node, $terms, $batch, $session_id, &$nids, &$dups) {
  $node->biblio_tagged_md5 = md5(serialize($node));
  if (!($dup = biblio_tagged_check_md5($node->biblio_tagged_md5))) {
    biblio_save_node($node, $terms, $batch, $session_id);
    if (!empty($node->nid)) {
      $nids[] = $node->nid;
    }
  }
  else {
    $dups[] = $dup;
  }
}
function _biblio_tagged_export($node) {
  $export = TRUE;
  $tagged = "";
  $tagged .= "%0 " . _biblio_tagged_type_map($node->biblio_type, $export) . "\r\n";
  switch ($node->biblio_type) {
    case 100:
    case 101:
    case 103:
    case 104:
    case 105:
    case 108:
    case 119:
      if (!empty($node->biblio_secondary_title)) {
        $tagged .= "%B " . trim($node->biblio_secondary_title) . "\r\n";
      }
      break;
    case 102:
      if (!empty($node->biblio_secondary_title)) {
        $tagged .= "%J " . trim($node->biblio_secondary_title) . "\r\n";
      }
      break;
  }
  if (isset($node->biblio_year) && $node->biblio_year < 9998) {
    $tagged .= "%D " . trim($node->biblio_year) . "\r\n";
  }
  if (!empty($node->title)) {
    $tagged .= "%T " . trim($node->title) . "\r\n";
  }
  foreach (biblio_get_contributor_category($node->biblio_contributors, 1) as $auth) {
    $tagged .= "%A " . trim($auth['name']) . "\r\n";
  }
  foreach (biblio_get_contributor_category($node->biblio_contributors, 2) as $auth) {
    $tagged .= "%E " . trim($auth['name']) . "\r\n";
  }
  foreach (biblio_get_contributor_category($node->biblio_contributors, 3) as $auth) {
    $tagged .= "%Y " . trim($auth['name']) . "\r\n";
  }
  foreach (biblio_get_contributor_category($node->biblio_contributors, 4) as $auth) {
    $tagged .= "%? " . trim($auth['name']) . "\r\n";
  }
  $kw_array = array();
  if (!empty($node->terms)) {
    foreach ($node->terms as $term) {
      $kw_array[] = $term->name;
    }
  }
  if (!empty($node->biblio_keywords)) {
    foreach ($node->biblio_keywords as $term) {
      $kw_array[] = $term;
    }
  }
  if (!empty($kw_array)) {
    $kw_array = array_unique($kw_array);
    foreach ($kw_array as $term) {
      $tagged .= "%K " . trim($term) . "\r\n";
    }
  }
  $abst = "";
  if (!empty($node->biblio_abst_e)) {
    $abst .= trim($node->biblio_abst_e);
  }
  if ($abst) {
    $search = array(
      "/\r/",
      "/\n/",
    );
    $replace = " ";
    $abst = preg_replace($search, $replace, $abst);
    $tagged .= "%X " . $abst . "\r\n";
  }
  $skip_fields = array(
    'biblio_year',
    'biblio_abst_e',
    'biblio_abst_f',
    'biblio_type',
  );
  $fields = drupal_schema_fields_sql('biblio');
  $fields = array_diff($fields, $skip_fields);
  foreach ($fields as $field) {
    if (!empty($node->{$field})) {
      $tagged .= _biblio_tagged_format_entry($field, $node->{$field});
    }
  }
  if (!empty($node->upload) && count($node->upload['und']) && user_access('view uploaded files')) {
    foreach ($node->upload['und'] as $file) {
      $tagged .= "%> " . file_create_url($file['uri']) . "\r\n";

      // insert file here.
    }
  }
  $tagged .= "\r\n";
  return $tagged;
}
function _biblio_tagged_format_entry($key, $value) {
  $reverse = TRUE;
  $tag = _biblio_tagged_field_map($key, $reverse);
  if (!empty($tag)) {
    return "{$tag} " . trim($value) . "\r\n";
  }
}
function _biblio_tagged_type_map($type, $reverse = FALSE) {
  static $map = array();
  if (empty($map)) {
    $map = biblio_get_map('type_map', 'tagged');
  }
  if ($reverse) {
    return ($tag = array_search($type, $map)) ? $tag : 'Generic';

    //return the biblio type or 129 (Misc) if type not found
  }
  return isset($map[$type]) ? $map[$type] : 129;

  //return the biblio type or 129 (Misc) if type not found
}
function _biblio_tagged_field_map($field, $reverse = FALSE) {
  static $fmap = array();
  if (empty($fmap)) {
    $fmap = biblio_get_map('field_map', 'tagged');
  }
  if ($reverse) {
    return ($tag = array_search($field, $fmap)) ? $tag : '';
  }
  return !empty($fmap[$field]) ? $fmap[$field] : '';
}
function biblio_tagged_tagged_map_reset($type = NULL) {
  module_load_include('install', 'biblio_tagged', 'biblio_tagged');
  _reset_tagged_map($type);
}
function biblio_tagged_check_md5($md5) {
  static $tagged_md5s = array();
  if (empty($tagged_md5s)) {
    $result = db_query("SELECT * FROM {biblio_tagged} ");
    foreach ($result as $row) {
      $tagged_md5s[$row->biblio_tagged_md5] = $row->nid;
    }
  }
  if (isset($tagged_md5s[$md5])) {
    return $tagged_md5s[$md5];
  }
  else {
    $tagged_md5s[$md5] = TRUE;

    // gaurd against duplicates in the same import
    return;
  }
}

Functions

Name	Description
biblio_tagged_biblio_export
biblio_tagged_biblio_export_link	Creates a link to export a node (or view) in tagged format
biblio_tagged_biblio_export_options
biblio_tagged_biblio_import
biblio_tagged_biblio_import_options
biblio_tagged_biblio_mapper_options
biblio_tagged_check_md5
biblio_tagged_node_delete
biblio_tagged_node_insert
biblio_tagged_node_view
biblio_tagged_tagged_map_reset
biblio_tagged_views_api
_biblio_tagged_export
_biblio_tagged_field_map
_biblio_tagged_format_entry
_biblio_tagged_import	Export data in tagged format.
_biblio_tagged_save
_biblio_tagged_type_map