biblio_theme.inc in Bibliography Module 6.2

File

includes/biblio_theme.inc

<?php

/**
 * @file
 *
 */
module_load_include('inc', 'biblio', 'includes/biblio.pages');

/**
 *
 *
 * @param array $element
 *
 *
 * @ingroup themeable
 */
function theme_biblio_coin_button($element) {
  return '<a href="/biblio/regen_coins"><input type="button"  name="' . $element['#name'] . '" value="' . $element['#value'] . '"  /></a>';
}

/**
 *
 *
 * @param object $node
 *
 *
 * @ingroup themeable
 */
function theme_biblio_openurl($node) {
  global $user;
  $openURLResolver = '';
  if (isset($user->biblio_baseopenurl) && !empty($user->biblio_baseopenurl) && variable_get('biblio_show_openurl_profile_form', '1')) {
    $openURLResolver = $user->biblio_baseopenurl;
  }
  else {
    $openURLResolver = variable_get('biblio_baseopenurl', '');
  }
  if (!empty($openURLResolver)) {
    $openURLResolver = check_plain($openURLResolver);
    $openurl_query_options = biblio_openURL($node);
    $openurl_image = check_plain(variable_get('biblio_openurlimage', ''));
    if ($openurl_image != '') {
      return array(
        'title' => '<img border="0" src="' . $openurl_image . '" />',
        'href' => $openURLResolver,
        'html' => TRUE,
        'attributes' => array(
          'class' => 'biblio-openurl-image',
        ),
        'query' => $openurl_query_options,
      );
    }
    else {
      return array(
        'title' => t('Find It Via OpenURL!'),
        'href' => $openURLResolver,
        'attributes' => array(
          'class' => 'biblio-openurl-text',
        ),
        'query' => $openurl_query_options,
      );
    }
  }
  return;
}

/**
 *
 *
 * @param object $node
 *
 *
 * @return array
 *
 */
function biblio_openURL($node) {
  $query = array();

  // Copyright:          Matthias Steffens <mailto:[e-mail]> and the file's
  //                     original author.
  // Original Author:    Richard Karnesky <mailto:[e-mail]>  //
  // Adapted for biblio: Ron Jerome
  //  global $openURLResolver; // these variables are defined in 'ini.inc.php'
  //  global $hostInstitutionAbbrevName;
  $co = biblio_contextObject($node);
  $query["ctx_ver"] = "Z39.88-2004";
  foreach ($co as $coKey => $coValue) {
    $coKey = preg_replace("/rft./", "", $coKey);
    $coKey = preg_replace("/au[0-9]*/", "au", $coKey);
    $query[$coKey] = rawurlencode($coValue);
  }
  $sid = "biblio:" . variable_get('site_name', 'Drupal');
  $user_sid = !empty($user->biblio_openurl_sid) ? $user->biblio_openurl_sid : '';
  $query["sid"] = !empty($user_sid) ? check_plain($user_sid) : check_plain(variable_get('biblio_openurl_sid', $sid));
  return $query;
}

/**
 *
 *
 * DEPRECIATED! this was the original output format which is not to flexable it will be removed
 * TODO: remove this function
 *
 * @param $node
 *
 * @param $base
 *
 * @param $style
 *
 *
 * @ingroup themeable
 */
function theme_biblio_long($node, $base = 'biblio', $style = 'classic') {
  if (module_exists('popups')) {
    popups_add_popups();
  }
  $output .= filter_xss($node->biblio_coins, array(
    'span',
  ));
  $layout = variable_get('biblio_node_layout', 'orig');
  if (variable_get('biblio_node_layout', 'orig') == 'ft' && strlen(trim($node->body)) && user_access('view full text')) {
    $output .= '<div class="biblio-head">' . theme('biblio_style', $node, $base, $style) . '</div>';
    $annotation_field = variable_get('biblio_annotations', 'none');
    if ($annotation_field != 'none' && $node->{$annotation_field}) {
      $output .= '<div class="biblio-annotation">';
      $output .= check_markup($node->{$annotation_field}, $node->format, FALSE);
      $output .= '</div>';
    }
    $output .= check_markup($node->body, $node->format, FALSE);
    if (biblio_access('export', $node)) {
      $output .= theme('biblio_export_links', $node);
    }
    return $output;
  }
  $author_links = variable_get('biblio_author_links', 1);
  foreach ((array) $node->biblio_contributors[1] as $auth) {
    $authors[] = $author_links ? theme('biblio_author_link', $auth) : check_plain(trim($auth['name']));
  }
  $authors = implode('; ', (array) $authors);
  $output .= theme('biblio_openurl', $node);
  $output .= '<div class="biblio_type"><h3>' . t("Publication Type") . ":</h3> " . _biblio_localize_type($node->biblio_type, $node->biblio_type_name) . "</div>\n";
  $output .= '<div class="biblio_authors"><h3>' . t("Authors") . ':</h3> ' . $authors . "</div>\n";
  $output .= '<div class="biblio_source"><h3>' . t("Source") . ': </h3> ';
  $source = null;
  if ($node->biblio_secondary_title) {
    $source .= check_plain($node->biblio_secondary_title);
  }
  if ($node->biblio_publisher) {
    $source .= $source ? ", " : "";
    $source .= check_plain($node->biblio_publisher);
  }
  if ($node->biblio_volume) {
    $source .= $source ? ", " : "";
    $source .= t('Volume') . ' ' . check_plain($node->biblio_volume);
  }
  if ($node->biblio_issue) {
    $source .= $source ? ", " : "";
    $source .= t('Issue') . ' ' . check_plain($node->biblio_issue);
  }
  if ($node->biblio_number) {
    $source .= $source ? ", " : "";
    $source .= t('Number') . ' ' . check_plain($node->biblio_number);
  }
  if ($node->biblio_place_published) {
    $source .= $source ? ", " : "";
    $source .= check_plain($node->biblio_place_published);
  }
  if ($node->biblio_pages) {
    $source .= $source ? ", " : "";
    $source .= 'p.' . check_plain($node->biblio_pages);
  }
  if (isset($node->biblio_year)) {
    $node->biblio_year = _biblio_text_year($node->biblio_year);
    $source .= ' (' . check_plain($node->biblio_year) . ')';
  }
  $output .= "{$source}</div>\n";
  if ($node->biblio_isbn) {
    $output .= '<h3>' . t("ISBN") . ':</h3> ' . check_plain($node->biblio_isbn) . "\n";
  }
  if ($node->biblio_call_number) {
    $output .= '<h3>' . t("Call Number") . ':</h3> ' . check_plain($node->biblio_call_number) . "\n";
  }
  if ($node->biblio_accession_number) {
    $output .= '<h3>' . t("Accession Number") . ':</h3> ' . check_plain($node->biblio_accession_number) . "\n";
  }
  if ($node->biblio_other_number) {
    $output .= '<h3>' . t("Other Number") . ':</h3> ' . check_plain($node->biblio_other_number) . "\n";
  }
  if ($node->biblio_url) {
    $attrib = variable_get('biblio_links_target_new_window', null) ? array(
      'target' => '_blank',
    ) : array();
    $output .= '<h3>' . t("URL") . ':</h3>' . l($node->biblio_url, $node->biblio_url, $attrib) . "\n";
  }
  if ($node->biblio_doi) {
    $doi_url = '';
    $attrib = variable_get('biblio_links_target_new_window', null) ? array(
      'target' => '_blank',
    ) : array();
    if (($doi_start = strpos($node->biblio_doi, '10.')) !== FALSE) {
      $doi = substr($node->biblio_doi, $doi_start);
      $doi_url .= 'http://dx.doi.org/' . $doi;
    }
    $output .= '<h3>' . t("DOI") . ':</h3>' . l($node->biblio_doi, $doi_url, $attrib) . "\n";
  }
  if (!empty($node->biblio_keywords)) {
    $output .= '<h3>' . t("Keywords") . ':</h3> ' . _biblio_keyword_links($node->biblio_keywords, $base) . "\n";
  }
  if ($node->biblio_abst_e) {
    $output .= '<h3>' . t("Abstract") . ':</h3> ' . check_markup($node->biblio_abst_e, $node->format, FALSE) . "\n";
  }
  if ($node->biblio_abst_f) {
    $output .= '<p>' . check_markup($node->biblio_abst_f, $node->format, FALSE) . "\n";
  }
  if ($node->biblio_notes) {
    $output .= '<h3>' . t("Notes") . ': </h3>' . check_markup($node->biblio_notes, $node->format, FALSE) . "\n";
  }
  if (strlen(trim($node->body)) && user_access('view full text')) {
    $output .= '<h3>' . t('Full Text') . ':</h3>' . check_markup($node->body, $node->format, FALSE);
  }
  return $output;
}

/**
 *
 *
 * @param object $node
 *   A node object
 * @param string $base
 *
 * @param $teaser
 *
 *
 * @ingroup themeable
 */
function theme_biblio_tabular($node, $base = 'biblio', $teaser = false) {
  static $citeproc;
  if (module_exists('popups')) {
    popups_add_popups();
  }
  $tid = $node->biblio_type;
  $fields = _biblio_get_field_information($node->biblio_type, TRUE);
  $extra_fields = module_invoke_all('get_biblio_field_info');
  $fields = array_merge($fields, $extra_fields);
  _biblio_localize_fields($fields);
  $rows[] = array(
    array(
      'data' => t('Title'),
      'class' => 'biblio-row-title biblio-field-title-title',
    ),
    array(
      'data' => filter_xss($node->title, biblio_get_allowed_tags()),
      'class' => 'biblio-field-contents-title',
    ),
  );
  $rows[] = array(
    array(
      'data' => t('Publication Type'),
      'class' => 'biblio-row-title biblio-field-title-type',
    ),
    array(
      'data' => isset($node->biblio_type_name) ? _biblio_localize_type($node->biblio_type, $node->biblio_type_name) : $node->biblio_type,
      'class' => 'biblio-field-contents-type',
    ),
  );
  if ($node->biblio_url) {
    $attrib = variable_get('biblio_links_target_new_window', null) ? array(
      'target' => '_blank',
    ) : array();
    $node->biblio_url = l($node->biblio_url, $node->biblio_url, $attrib);
  }
  if ($node->biblio_doi) {
    $doi_url = '';
    $attrib = variable_get('biblio_links_target_new_window', null) ? array(
      'target' => '_blank',
    ) : array();
    if (($doi_start = strpos($node->biblio_doi, '10.')) !== FALSE) {
      $doi = substr($node->biblio_doi, $doi_start);
      $doi_url .= 'http://dx.doi.org/' . $doi;
    }
    $node->biblio_doi = l($node->biblio_doi, $doi_url, $attrib);
  }
  foreach ($fields as $key => $row) {

    // handling the contributor categories like any other field orders them correctly by weight
    if ($row['type'] == 'contrib_widget' && !empty($node->biblio_contributors[$row['fid']][0]['name'])) {
      $data = biblio_format_authors($node->biblio_contributors[$row['fid']]);
    }
    elseif (empty($node->{$row}['name']) || $row['name'] == 'biblio_coins') {
      continue;
    }
    else {
      switch ($row['name']) {
        case 'biblio_keywords':
          $data = _biblio_keyword_links($node->{$row}['name'], $base);
          break;
        case 'biblio_url':
        case 'biblio_doi':

          // check_plain is not need on these since they have gone through
          // the l() function which does a check_plain
          $data = $node->{$row}['name'];
          break;
        default:
          if ($row['type'] == 'textarea') {
            $format = isset($node->biblio_formats[$row['name']]) ? $node->biblio_formats[$row['name']] : $node->format;
            $data = check_markup($node->{$row}['name'], $format, FALSE);
          }
          else {
            $data = check_plain($node->{$row}['name']);
          }
      }
    }
    $rows[] = array(
      array(
        'data' => t($row['title']),
        'class' => 'biblio-row-title biblio-field-title-' . str_replace('_', '-', str_replace('biblio_', '', $row['name'])),
      ),
      array(
        'data' => $data,
        'class' => 'biblio-field-contents-' . str_replace('_', '-', str_replace('biblio_', '', $row['name'])),
      ),
    );
  }
  if (strlen(trim($node->body)) && user_access('view full text')) {
    $rows[] = array(
      array(
        'data' => t('Full Text'),
        'valign' => 'top',
      ),
      array(
        'data' => check_markup($node->body, $node->format, FALSE),
      ),
    );
  }
  $output = '<div id="biblio-node">';
  $output .= filter_xss($node->biblio_coins, array(
    'span',
  ));
  $header = array();
  $output .= theme('table', $header, $rows);
  $output .= '</div>';
  return $output;
}

/**
 *
 *
 * @param array $contributors
 *
 * @param string $style
 *   (optional)
 * @param integer $cat
 *   (optional)
 * @param bool $inline
 *   (optional)
 * @param string $glue
 *   (optional)
 *
 * @ingroup themeable
 */
function theme_biblio_authors($contributors, $style = 'classic', $cat = 1, $inline = false, $glue = ', ') {

  // Immediately return if there are no contributors
  if (empty($contributors)) {

    // @todo: Shouldn't this return any empty string?
    return;
  }
  $author_style_function = '_' . $style . '_format_author';
  $author_links = variable_get('biblio_author_links', 1);
  $base = variable_get('biblio_base', 'biblio');
  foreach ($contributors as $key => $author) {
    if (!empty($author['name']) && !isset($author['lastname'])) {

      // This is needed for form preview to fill in all fields.
      $author = biblio_parse_author($author, $cat);
    }
    if (strlen($author['name'])) {
      ${$author}['name'] = $author_style_function($author);
      if ($author_links) {
        $format = theme('biblio_author_link', $author);
      }

      // Add the auth_type as css ID to allow later formatting.
      $author_array[] = '<span id="' . $author['auth_type'] . '">' . $format . '</span>';
    }
  }
  if (empty($author_array)) {
    return '';
  }
  $output = '<span class="biblio_authors">';
  $output .= implode($glue, $author_array);
  $output .= '</span>';
  return $output;
}

/**
 *
 *
 *
 * @return array
 *
 */
function _biblio_get_latin1_regex() {
  $alnum = "[:alnum:]ÄÅÁÀÂÃÇÉÈÊËÑÖØÓÒÔÕÜÚÙÛÍÌÎÏÆäåáàâãçéèêëñöøóòôõüúùûíìîïæÿß";

  // Matches ISO-8859-1 letters:
  $alpha = "[:alpha:]ÄÅÁÀÂÃÇÉÈÊËÑÖØÓÒÔÕÜÚÙÛÍÌÎÏÆäåáàâãçéèêëñöøóòôõüúùûíìîïæÿß";

  // Matches ISO-8859-1 control characters:
  $cntrl = "[:cntrl:]";

  // Matches ISO-8859-1 dashes & hyphens:
  $dash = "-–";

  // Matches ISO-8859-1 digits:
  $digit = "[\\d]";

  // Matches ISO-8859-1 printing characters (excluding space):
  $graph = "[:graph:]ÄÅÁÀÂÃÇÉÈÊËÑÖØÓÒÔÕÜÚÙÛÍÌÎÏÆäåáàâãçéèêëñöøóòôõüúùûíìîïæÿß";

  // Matches ISO-8859-1 lower case letters:
  $lower = "[:lower:]äåáàâãçéèêëñöøóòôõüúùûíìîïæÿß";

  // Matches ISO-8859-1 printing characters (including space):
  $print = "[:print:]ÄÅÁÀÂÃÇÉÈÊËÑÖØÓÒÔÕÜÚÙÛÍÌÎÏÆäåáàâãçéèêëñöøóòôõüúùûíìîïæÿß";

  // Matches ISO-8859-1 punctuation:
  $punct = "[:punct:]";

  // Matches ISO-8859-1 whitespace (separating characters with no visual representation):
  $space = "[\\s]";

  // Matches ISO-8859-1 upper case letters:
  $upper = "[:upper:]ÄÅÁÀÂÃÇÉÈÊËÑÖØÓÒÔÕÜÚÙÛÍÌÎÏÆ";

  // Matches ISO-8859-1 "word" characters:
  $word = "_[:alnum:]ÄÅÁÀÂÃÇÉÈÊËÑÖØÓÒÔÕÜÚÙÛÍÌÎÏÆäåáàâãçéèêëñöøóòôõüúùûíìîïæÿß";

  // Defines the PCRE pattern modifier(s) to be used in conjunction with the above variables:
  // More info: <http://www.php.net/manual/en/reference.pcre.pattern.modifiers.php>
  $patternModifiers = "";
  return array(
    $alnum,
    $alpha,
    $cntrl,
    $dash,
    $digit,
    $graph,
    $lower,
    $print,
    $punct,
    $space,
    $upper,
    $word,
    $patternModifiers,
  );
}

/*
 * Helper function for theme_biblio_format_authors() and theme_biblio_page_number()
 *
 * @return array
 *
 */
function _biblio_get_utf8_regex() {

  // Matches Unicode letters & digits:
  $alnum = "\\p{Ll}\\p{Lu}\\p{Lt}\\p{Lo}\\p{Nd}";

  // Unicode-aware equivalent of "[:alnum:]"
  // Matches Unicode letters:
  $alpha = "\\p{Ll}\\p{Lu}\\p{Lt}\\p{Lo}";

  // Unicode-aware equivalent of "[:alpha:]"
  // Matches Unicode control codes & characters not in other categories:
  $cntrl = "\\p{C}";

  // Unicode-aware equivalent of "[:cntrl:]"
  // Matches Unicode dashes & hyphens:
  $dash = "\\p{Pd}";

  // Matches Unicode digits:
  $digit = "\\p{Nd}";

  // Unicode-aware equivalent of "[:digit:]"
  // Matches Unicode printing characters (excluding space):
  $graph = "^\\p{C}\t\n\f\r\\p{Z}";

  // Unicode-aware equivalent of "[:graph:]"
  // Matches Unicode lower case letters:
  $lower = "\\p{Ll}\\p{M}";

  // Unicode-aware equivalent of "[:lower:]"
  // Matches Unicode printing characters (including space):
  $print = "\\P{C}";

  // same as "^\p{C}", Unicode-aware equivalent of "[:print:]"
  // Matches Unicode punctuation (printing characters excluding letters & digits):
  $punct = "\\p{P}";

  // Unicode-aware equivalent of "[:punct:]"
  // Matches Unicode whitespace (separating characters with no visual representation):
  $space = "\t\n\f\r\\p{Z}";

  // Unicode-aware equivalent of "[:space:]"
  // Matches Unicode upper case letters:
  $upper = "\\p{Lu}\\p{Lt}";

  // Unicode-aware equivalent of "[:upper:]"
  // Matches Unicode "word" characters:
  $word = "_\\p{Ll}\\p{Lu}\\p{Lt}\\p{Lo}\\p{Nd}";

  // Unicode-aware equivalent of "[:word:]" (or "[:alnum:]" plus "_")
  // Defines the PCRE pattern modifier(s) to be used in conjunction with the above variables:
  // More info: <http://www.php.net/manual/en/reference.pcre.pattern.modifiers.php>
  $patternModifiers = "u";

  // the "u" (PCRE_UTF8) pattern modifier causes PHP/PCRE to treat pattern strings as UTF-8
  return array(
    $alnum,
    $alpha,
    $cntrl,
    $dash,
    $digit,
    $graph,
    $lower,
    $print,
    $punct,
    $space,
    $upper,
    $word,
    $patternModifiers,
  );
}

/**
 *
 *
 * @return array
 *
 */
function _biblio_get_regex_patterns() {

  // Checks if PCRE is compiled with UTF-8 and Unicode support
  if (!@preg_match('/\\pL/u', 'a')) {

    // probably a broken PCRE library
    return _biblio_get_latin1_regex();
  }
  else {

    // Unicode safe filter for the value
    return _biblio_get_utf8_regex();
  }
}

/**
 *
 *
 * @param array $authors
 *
 *
 * @return string
 *
 */
function biblio_format_authors($authors) {
  if (module_exists('biblio_citeproc')) {
    static $auth_proc;
    if (!isset($auth_proc)) {
      module_load_include('inc', 'biblio_citeproc', 'CSL');
      $csl = '<name form="long"
                   name-as-sort-order="all"
                   sort-separator=", "
                   initialize-with=""
                   delimiter=", "
                   />';
      $csl_doc = new DOMDocument();
      $csl_doc
        ->loadXML($csl);
      $auth_proc = new csl_rendering_element($csl_doc);
    }
    $output = $auth_proc
      ->render($authors);
  }
  else {
    $style_name = biblio_get_style();
    $style_function = "biblio_style_{$style_name}" . "_author_options";
    if (!function_exists($style_function)) {
      module_load_include('inc', 'biblio', "styles/biblio_style_{$style_name}");
    }
    $author_options = $style_function();

    // Set to really high value so we will see all authors.
    $author_options['numberOfAuthorsTriggeringEtAl'] = 100;
    $output = theme('biblio_format_authors', $authors, $author_options);
  }
  return $output;
}

/**
 *
 *
 * @param array $contributors
 *
 * @param array $options
 *
 * @param bool $inline
 *
 *
 * @ingroup themeable
 */
function theme_biblio_format_authors($contributors, $options, $inline = FALSE) {
  if (empty($contributors)) {
    return;
  }
  list($alnum, $alpha, $cntrl, $dash, $digit, $graph, $lower, $print, $punct, $space, $upper, $word, $patternModifiers) = _biblio_get_regex_patterns();
  $base = variable_get('biblio_base', 'biblio');
  $author_links = variable_get('biblio_author_links', 1);

  // Determine how many authors we have to process.
  $authorCount = count($contributors);

  // This variable will hold the final author string.
  $output = "";
  $includeStringAfterFirstAuthor = FALSE;
  if (empty($options['numberOfAuthorsTriggeringEtAl'])) {
    $options['numberOfAuthorsTriggeringEtAl'] = $authorCount;
  }
  if (empty($options['includeNumberOfAuthors'])) {
    $options['includeNumberOfAuthors'] = $authorCount;
  }
  foreach ($contributors as $rank => $author) {
    if (empty($author['name'])) {
      continue;
    }
    if (empty($author['literal'])) {
      if (!isset($author['lastname'])) {
        module_load_include('inc', 'biblio', 'includes/biblio.contributors');

        // This is needed for form preview to fill in all fields.
        $author = biblio_parse_author($author, $author['auth_type']);
      }
      if (!empty($author['firstname'])) {
        if ($options['shortenGivenNames']) {

          // if we're supposed to abbreviate given names
          // within initials, reduce all full first names (-> defined by a starting uppercase character, followed by one ore more lowercase characters)
          // to initials, i.e., only retain their first character
          $author['firstname'] = preg_replace("/([{$upper}])[{$lower}]+/{$patternModifiers}", '\\1', $author['firstname']);
          $author['initials'] = $author['firstname'] . $author['initials'];
          unset($author['firstname']);

          //$author['firstname'] = drupal_substr($author['firstname'], 0, 1);

          // the next line caused extra betweenInitialsDelim to appear in some circumstances

          //$author['firstname'] = preg_replace("/($space|$dash)?/$patternModifier", $options['betweenInitialsDelim'], $author['firstname']);
        }
      }
      if (isset($author['initials'])) {

        // within initials, remove any dots:
        $author['initials'] = preg_replace("/([{$upper}])\\.+/{$patternModifiers}", "\\1", $author['initials']);

        //$author['initials'] = str_replace('.', '',  $author['initials']);

        // within initials, remove any spaces *between* initials:
        $author['initials'] = preg_replace("/(?<=[-{$upper}]) +(?=[-{$upper}])/{$patternModifiers}", "", $author['initials']);

        //$author['initials'] = str_replace(' ', '',  $author['initials']);

        // within initials, add a space after a hyphen, but only if ...
        if (preg_match('/ $/', $options['betweenInitialsDelim'])) {

          // ... the delimiter that separates initials ends with a space
          $author['initials'] = preg_replace("/-(?=[{$upper}])/{$patternModifiers}", "- ", $author['initials']);
        }

        // then, separate initials with the specified delimiter:
        $delim = $options['betweenInitialsDelim'];
        $author['initials'] = preg_replace("/([{$upper}])(?=[^{$lower}]+|\$)/{$patternModifiers}", "\\1{$delim}", $author['initials']);
        $shortenInitials = isset($options['numberOfInitialsToKeep']) ? $options['numberOfInitialsToKeep'] : FALSE;
        if ($shortenInitials) {
          $author['initials'] = drupal_substr($author['initials'], 0, $shortenInitials);
        }

        //      if ($options['shortenGivenNames'] && !empty($author['firstname'])) {
        //        $author['firstname'] = $author['firstname'].$options['betweenInitialsDelim'].$author['initials'];
        //        if ($shortenInitials) $author['firstname'] = drupal_substr($author['firstname'], 0, $shortenInitials);
        //      }
        if (!empty($author['firstname'])) {
          $author['firstname'] = $author['firstname'] . ' ' . $author['initials'];
        }
        elseif (empty($author['firstname'])) {
          $author['firstname'] = $author['initials'];
        }
      }

      // if there is a surname prefix like "van", "von" etc, stick it back before the last name.
      if (!empty($author['prefix'])) {
        $author['lastname'] = $author['prefix'] . ' ' . $author['lastname'];
      }
      if (!empty($author['suffix'])) {
        $author['lastname'] = $author['lastname'] . ', ' . $author['suffix'];
      }
      if (!empty($author['firstname'])) {
        if ($rank == 0) {

          // -> first author
          if ($options['initialsBeforeAuthorFirstAuthor']) {
            $author['name'] = $author['firstname'] . $options['AuthorsInitialsDelimFirstAuthor'] . $author['lastname'];
          }
          else {
            $author['name'] = $author['lastname'] . $options['AuthorsInitialsDelimFirstAuthor'] . $author['firstname'];
          }
        }
        else {

          // $rank > 0 // -> all authors except the first one
          if ($options['initialsBeforeAuthorStandard']) {
            $author['name'] = $author['firstname'] . $options['AuthorsInitialsDelimStandard'] . $author['lastname'];
          }
          else {
            $author['name'] = $author['lastname'] . $options['AuthorsInitialsDelimStandard'] . $author['firstname'];
          }
        }
      }
      else {
        $author['name'] = $author['lastname'];
      }
    }
    if ($author_links) {
      $author['name'] = theme('biblio_author_link', $author);
    }
    else {
      $author['name'] = check_plain($author['name']);
    }

    // append this author to the final author string:
    if ($rank == 0 or $rank + 1 < $authorCount) {

      // -> first author, or (for multiple authors) all authors except the last one
      if ($rank == 0) {

        // -> first author
        $output .= $author['name'];
      }
      else {

        // -> for multiple authors, all authors except the first or the last one
        $output .= $options['BetweenAuthorsDelimStandard'] . $author['name'];
      }

      // we'll append the string in '$customStringAfterFirstAuthors' to the number of authors given in '$includeNumberOfAuthors' if the total number of authors is greater than the number given in '$numberOfAuthorsTriggeringEtAl':
      if ($rank + 1 == $options['includeNumberOfAuthors'] and $authorCount > $options['numberOfAuthorsTriggeringEtAl']) {
        if (preg_match("/__NUMBER_OF_AUTHORS__/", $options['customStringAfterFirstAuthors'])) {
          $customStringAfterFirstAuthors = preg_replace("/__NUMBER_OF_AUTHORS__/", $authorCount - $options['includeNumberOfAuthors'], $options['customStringAfterFirstAuthors']);

          // resolve placeholder
        }
        $includeStringAfterFirstAuthor = true;
        break;
      }
    }
    elseif ($authorCount > 1 and $rank + 1 == $authorCount) {

      // -> last author (if multiple authors)
      $output .= $options['BetweenAuthorsDelimLastAuthor'] . $author['name'];
    }
  }

  // do some final clean up:
  if ($options['encodeHTML']) {

    //$output = encodeHTML($output); // HTML encode higher ASCII characters within the newly arranged author contents
    if ($includeStringAfterFirstAuthor) {
      $output .= $options['customStringAfterFirstAuthors'];
    }
  }

  // the custom string won't get HTML encoded so that it's possible to include HTML tags (such as '<i>') within the string
  $output = preg_replace("/  +/", " ", $output);

  // remove double spaces (which occur e.g., when both, $betweenInitialsDelim & $newAuthorsInitialsDelim..., end with a space)
  $output = preg_replace("/ +([,.;:?!()]|\$)/", "\\1", $output);

  // remove excess spaces before [,.;:?!()] and from the end of the author string
  return $output;
}

/**
 * Returns HTML for an author link.
 *
 * @param array $author
 *   An associative array with information about an author including elements:
 *   - name: A string with the author's name.
 *   - cid: An integer identifying the author in biblio module.
 *   - drupal_uid: (optional) An integer linking to Drupal user ID.
 *
 * @ingroup themeable
 */
function theme_biblio_author_link($author) {
  $base = variable_get('biblio_base', 'biblio');
  $link_to_profile = variable_get('biblio_author_link_profile', 0);
  $link_to_profile_path = variable_get('biblio_author_link_profile_path', 'user/[uid]');
  $options = array();
  $language = isset($node->language) ? $node->language : '';
  if (isset($_GET['sort'])) {
    $options['query']['sort'] = $_GET['sort'];
  }
  if (isset($_GET['order'])) {
    $options['query']['order'] = $_GET['order'];
  }
  if (isset($author['drupal_uid']) && $author['drupal_uid'] > 0) {
    $options['attributes']['class'] = 'biblio-local-author';
  }
  if (variable_get('biblio_links_target_new_window', NULL)) {
    $options = array_merge($options, array(
      'attributes' => array(
        'target' => '_blank',
      ),
      'html' => TRUE,
    ));
  }
  if ($link_to_profile && (isset($author['drupal_uid']) && !empty($author['drupal_uid']))) {
    $data['user'] = user_load($author['drupal_uid']);
    $path = token_replace_multiple($link_to_profile_path, $data);
    $alias = drupal_get_path_alias($path, $language);
    $path_profile = variable_get('biblio_show_profile', '0') ? "{$path}/{$base}" : $alias;
    return l(trim($author['name']), $path_profile, $options);
  }
  else {
    return l(trim($author['name']), "{$base}/author/" . $author['cid'], $options);
  }
  return $html;
}

/**
* Creates HTML string for a biblio page number or range.
*

// Format page information:
//
// NOTES: - this function (and refbase in general) assumes following rules for the original formatting of page information in '$origPageInfo':
//          - single-page items are given as a page range with identical start & end numbers (e.g. "127-127")
//          - multi-page items are given as a page range where the end number is greater than the start number (e.g. "127-132")
//          - for multi-page items where only the start page is known, a hyphen is appended to the start page (e.g. "127-")
//          - total number of pages are given with a "pp" suffix (e.g. "498 pp"), see TODO
//          - the given page info is left as is if it does not match any of the above rules (e.g. a single page number is ambiguous since it
//            could mean a single page or the total number of pages)
//        - the function attempts to deal with page locators that contain letters (e.g. "A1 - A3" or "4a-4c") but, ATM, locator parts (e.g. "A1")
//          must contain at least one digit character & must not contain any whitespace
//
// TODO:  - should we only use Unicode-aware regex expressions (i.e. always use '$space', '$digit' or '$word' instead of ' ', '\d' or '\w', etc)?
//        - recognize & process total number of pages
//        - for '$shortenPageRangeEnd=true', add support for page locators that contain letters (e.g. "A1 - A3" or "4a-4c")
*
* // @todo: There are too many parameters here. Changed to an $options array?
*
* @param $origPageInfo
*
* @param string $pageRangeDelim
*   (optional)
* @param string $singlePagePrefix
*   (optional)
* @param string $pageRangePrefix
*   (optional)
* @param string $totalPagesPrefix
*   (optional)
* @param string $singlePageSuffix
*   (optional)
* @param string $pageRangeSuffix
*   (optional)
* @param string $totalPagesSuffix
*   (optional)
* @param bool $shortenPageRangeEnd
*   (optional) A logical flag with a default FALSE value.
*
* @ingroup themeable
*/
function theme_biblio_page_number($origPageInfo, $pageRangeDelim = "-", $singlePagePrefix = "", $pageRangePrefix = "", $totalPagesPrefix = "", $singlePageSuffix = "", $pageRangeSuffix = "", $totalPagesSuffix = "", $shortenPageRangeEnd = FALSE) {
  list($alnum, $alpha, $cntrl, $dash, $digit, $graph, $lower, $print, $punct, $space, $upper, $word, $patternModifiers) = _biblio_get_regex_patterns();

  // Check original page info for any recognized page locators, and process them appropriately:
  if (preg_match("/\\w*\\d+\\w* *[{$dash}]+ *(?:\\w*\\d+\\w*)?/{$patternModifiers}", $origPageInfo)) {

    // the original page info contains a page range (like: "127-127", "127-132", "A1 - A3", "4a-4c", or "127-" if only start page given)
    // Remove any whitespace around dashes or hyphens that indicate a page range:
    $origPageInfo = preg_replace("/(\\w*\\d+\\w*) *([{$dash}]+) *(\\w*\\d+\\w*)?(?=[^\\w\\d]|\$)/{$patternModifiers}", "\\1\\2\\3", $origPageInfo);

    // Split original page info into its functional parts:
    // NOTE: ATM, we simply split on any whitespace characters, then process all parts with page ranges
    //       (this will also reduce runs of whitespace to a single space)
    $partsArray = preg_split("/ +/", $origPageInfo);
    $partsCount = count($partsArray);
    for ($i = 0; $i < $partsCount; $i++) {

      // Format parts with page ranges:
      // - single-page item:
      if (preg_match("/(\\w*\\d+\\w*)[{$dash}]+\\1(?=[^\\w\\d]|\$)/{$patternModifiers}", $partsArray[$i])) {

        // this part contains a page range with identical start & end numbers (like: "127-127")
        $partsArray[$i] = preg_replace("/(\\w*\\d+\\w*)[{$dash}]+\\1(?=[^\\w\\d]|\$)/{$patternModifiers}", $singlePagePrefix . "\\1" . $singlePageSuffix, $partsArray[$i]);
      }
      elseif (preg_match("/\\w*\\d+\\w*[{$dash}]+(?:\\w*\\d+\\w*)?(?=[^\\w\\d]|\$)/{$patternModifiers}", $partsArray[$i])) {

        // this part contains a page range (like: "127-132", or "127-" if only start page given)
        // In case of '$shortenPageRangeEnd=true', we abbreviate ending page numbers so that digits aren't repeated unnecessarily:
        if ($shortenPageRangeEnd and preg_match("/\\d+[{$dash}]+\\d+/{$patternModifiers}", $partsArray[$i])) {

          // ATM, only digit-only page locators (like: "127-132") are supported
          // NOTE: the logic of this 'if' clause doesn't work if the original page info contains something like "173-190; 195-195" (where, for the first page range, '$endPage' would be "190;" and not "190")
          list($startPage, $endPage) = preg_split("/[{$dash}]+/{$patternModifiers}", $partsArray[$i]);
          $countStartPage = strlen($startPage);
          $countEndPage = strlen($endPage);
          if ($countStartPage == $countEndPage and $startPage < $endPage) {
            for ($j = 0; $j < $countStartPage; $j++) {
              if (preg_match("/^" . substr($startPage, $j, 1) . "/", $endPage)) {

                // if the ending page number has a digit that's identical to the starting page number (at the same digit offset)
                $endPage = substr($endPage, 1);
              }
              else {
                break;
              }
            }
          }
          $partsArray[$i] = $pageRangePrefix . $startPage . $pageRangeDelim . $endPage . $pageRangeSuffix;
        }
        else {

          // don't abbreviate ending page numbers:
          $partsArray[$i] = preg_replace("/(\\w*\\d+\\w*)[{$dash}]+(\\w*\\d+\\w*)?(?=[^\\w\\d]|\$)/{$patternModifiers}", $pageRangePrefix . "\\1" . $pageRangeDelim . "\\2" . $pageRangeSuffix, $partsArray[$i]);
        }
      }
    }
    $newPageInfo = join(" ", $partsArray);

    // merge again all parts
  }
  else {
    $newPageInfo = $origPageInfo;
  }

  // page info is ambiguous, so we don't mess with it
  return $newPageInfo;
}

/**
 * Applies a "style" function to a single node.
 *
 * @param $node A node
 * @param $base The base url for biblio (defaults to /biblio)
 * @param $style_name The name of the style to apply
 * @param $inline "inline" mode returns the raw HTML rather than letting drupal render the whole page.
 *
 * @ingroup themeable
 */
function theme_biblio_style($node, $base = 'biblio', $style_name = 'classic', $inline = false) {
  module_load_include('inc', 'biblio', "styles/biblio_style_{$style_name}");
  $style_function = "biblio_style_{$style_name}";
  $styled_node = $style_function($node, $base, $inline);
  return $styled_node . filter_xss($node->biblio_coins, array(
    'span',
  ));
}

/**
 * @param $node
 * @param $base
 * @param $style
 * @param $inline
 *
 * @ingroup themeable
 */
function theme_biblio_entry($node, $base = 'biblio', $style = 'classic', $inline = false) {
  $output = "\n" . '<div class="biblio-entry">' . "\n";
  $output .= '<div class="biblio-style-' . $style . '">' . "\n";
  if (!$node->status) {
    $output .= '<div id="node-' . $node->nid . '" class="node node-unpublished">';
  }

  // first add the styled entry...
  $output .= theme('biblio_style', $node, $base, $style, $inline);

  // now add the various links
  if ($node->biblio_abst_e) {
    $output .= '<span class="biblio-abstract-link">';
    $output .= l(" Abstract", "node/{$node->nid}") . "\n";
    $output .= '</span>';
  }
  $annotation_field = variable_get('biblio_annotations', 'none');
  if ($annotation_field != 'none' && $node->{$annotation_field}) {
    $output .= '<div class="biblio-annotation">';
    $output .= check_markup($node->{$annotation_field}, $node->format, FALSE);
    $output .= '</div>';
  }
  $openurl_base = variable_get('biblio_baseopenurl', '');
  if ($openurl_base) {
    $output .= theme('biblio_openurl', biblio_openurl($node));
  }
  if (biblio_access('export', $node)) {
    $output .= theme('biblio_export_links', $node);
  }
  if (biblio_access('download', $node)) {

    // add links to attached files (if any)
    $output .= theme('biblio_download_links', $node);
  }
  if (!$node->status) {
    $output .= '</div>';
  }
  $output .= "\n</div></div>";
  return $output;
}

/**
 *
 *
 * @param $form
 *
 * @see biblio_filters()
 *
 * @ingroup themeable
 */
function theme_biblio_filters($form) {
  $output = '';
  if (sizeof($form['current'])) {
    $output .= '<ul>';
    foreach (element_children($form['current']) as $key) {
      $output .= '<li>' . drupal_render($form['current'][$key]) . '</li>';
    }
    $output .= '</ul>';
  }
  $output .= '<dl class="multiselect">' . (sizeof($form['current']) ? '<dt><em>' . t('and') . '</em> ' . t('where') . '</dt>' : '') . '<dd class="a">';
  foreach (element_children($form['filter']) as $key) {
    $output .= drupal_render($form['filter'][$key]);
  }
  $output .= '</dd>';
  $output .= '<dt>' . t('is') . '</dt><dd class="b">';
  foreach (element_children($form['status']) as $key) {
    $output .= drupal_render($form['status'][$key]);
  }
  $output .= '</dd>';
  $output .= '</dl>';
  $output .= '<div class="container-inline" id="node-buttons">' . drupal_render($form['buttons']) . '</div>';
  $output .= '<br class="clear" />';
  return $output;
}

/**
 * @param $form
 *
 * @see biblio_admin_types_edit_form()
 *
 * @ingroup themeable
 */
function theme_biblio_form_filter($form) {
  $output .= '<div id="biblio-admin-filter">';
  $output .= drupal_render($form['filters']);
  $output .= '</div>';
  $output .= drupal_render($form);
  return $output;
}

/**
 * Creates the HTML for the biblio_admin_types_edit_form().
 *
 * @param $form
 *
 *
 * @see biblio_admin_types_edit_form()
 *
 * @ingroup themeable
 */
function theme_biblio_admin_types_edit_form($form) {
  drupal_add_tabledrag('field-table', 'order', 'sibling', 'weight', NULL, NULL, FALSE);
  $tid = !empty($form['#parameters'][2]) ? $form['#parameters'][2] : FALSE;

  // Build the table with all the fields if no $tid is given, or only the common
  // and customized fields if $tid is given
  $conf_table = array();
  foreach (element_children($form['configured_flds']) as $fld) {
    $form['configured_flds'][$fld]['weight']['#attributes']['class'] = 'weight';
    $conf_row = array();
    $conf_row[] = array(
      'data' => drupal_render($form['configured_flds'][$fld]['name']),
    );
    $conf_row[] = array(
      'data' => drupal_render($form['configured_flds'][$fld]['title']),
    );
    if (isset($form['configured_flds'][$fld]['auth_type'])) {
      $form['configured_flds'][$fld]['hint']['#size'] = 15;
      $conf_row[] = array(
        'data' => drupal_render($form['configured_flds'][$fld]['hint']),
      );
      $conf_row[] = array(
        'data' => drupal_render($form['configured_flds'][$fld]['auth_type']),
      );
    }
    else {
      $form['configured_flds'][$fld]['hint']['#size'] = $tid ? 38 : 36;
      $conf_row[] = array(
        'data' => drupal_render($form['configured_flds'][$fld]['hint']),
        'colspan' => 2,
      );
    }
    foreach (element_children($form['configured_flds'][$fld]['checkboxes']) as $oid) {
      if (is_array($form['configured_flds'][$fld]['checkboxes'])) {
        $conf_row[] = array(
          'data' => drupal_render($form['configured_flds'][$fld]['checkboxes'][$oid]),
          'title' => $oid,
        );
      }
    }
    $conf_row[] = array(
      'data' => drupal_render($form['configured_flds'][$fld]['weight']),
    );
    $conf_table[] = array(
      'data' => $conf_row,
      'class' => 'draggable',
    );
  }
  if ($tid) {
    $header = array(
      t('Field Name'),
      t('Title'),
      t('Hint'),
      '',
      t('Visible'),
      t('Required'),
      t('Weight'),
    );
  }
  else {
    $header = array(
      t('Field Name'),
      t('Default Title'),
      t('Hint'),
      '',
      t('Common'),
      t('Required'),
      t('Autocomplete'),
      t('Weight'),
    );
  }
  $output = '<p>';
  $output .= '<h2>' . drupal_render($form['top_message']) . '</h2>';
  $output .= drupal_render($form['help']);
  $output .= drupal_render($form['type_name']);
  $output .= drupal_render($form['options']);
  $output .= theme('table', $header, $conf_table, array(
    'id' => 'field-table',
  ));
  $output .= '<p><center>' . drupal_render($form['submit']) . '</center></p>';
  $output .= drupal_render($form);
  return $output;
}

/**
 * Creates HTML-formatted string for biblio download links.
 *
 * @param object $node
 *   (optional)
 *
 * @ingroup themeable
 */
function theme_biblio_download_links($node = NULL) {
  $files = '';
  if (!empty($node->files) && count($node->files) > 0 && user_access('view uploaded files')) {
    $files .= '<span class="biblio_file_links">';
    $files .= '&nbsp;' . t('Download') . ':&nbsp;';
    $file_count = 0;
    foreach ($node->files as $file) {
      if ($file->list) {
        if (variable_get('biblio_download_links_to_node', 0)) {
          $href = 'biblio/view/' . $node->nid;
        }
        else {
          $href = file_create_url($file->filepath);
        }
        $text = $file->description ? $file->description : $file->filename;
        if ($file_count) {
          $files .= '; ';
        }
        $files .= l($text, $href) . '&nbsp;(' . format_size($file->filesize) . ')';
        $file_count++;
      }
    }
    $files .= '</span>';
  }

  // Now add any CCK FileField files ...
  if (module_exists('filefield')) {
    $fields = filefield_get_field_list('biblio');
    foreach ($fields as $field_name => $field) {
      if (filefield_view_access($field_name, $node)) {
        $field_files = filefield_get_node_files($node, $field_name);
        if ($field_files) {
          foreach ($field_files as $file) {
            if ($file['fid']) {
              $files .= theme('filefield_file', $file);
            }
          }
        }
      }
    }
  }
  return $files;
}

/**
 * Creates a group of links for the various export functions.
 *
 * @param $nid
 *   the node id to export (if omitted, all nodes in the current view will be exported
 *
 * @ingroup themeable
 */
function theme_biblio_export_links($node = NULL) {
  global $pager_total_items;
  $output = '';
  $links = array();
  $base = variable_get('biblio_base', 'biblio');
  if (biblio_access('export', $node)) {
    $show_link = variable_get('biblio_lookup_links', array(
      'google' => TRUE,
    ));
    $lookup_links = module_invoke_all('biblio_lookup_link', $node);
    if ($show_link['google'] && !empty($node)) {
      $lookup_links['biblio_google_scholar'] = theme('google_scholar_link', $node);
    }
    $nid = isset($node->nid) ? $node->nid : NULL;
    $export_links = module_invoke_all('biblio_export_link', $nid);
    $links = array_merge($lookup_links, $export_links);
  }
  if (empty($node) && !empty($links)) {
    $output = t('Export @count results', array(
      '@count' => $pager_total_items[0],
    )) . ': ';
  }
  return $output . theme('links', $links, array(
    'class' => "biblio-export-buttons",
  ));
}

/**
 *
 *
 * @param object $node
 *
 *
 * @ingroup themeable
 */
function theme_google_scholar_link($node) {
  $query = array();
  $query['btnG'] = 'Search+Scholar';
  $query['as_q'] = '"' . str_replace(array(
    ' ',
    '(',
    ')',
  ), array(
    '+',
  ), $node->title) . '"';

  // as_q = all the words
  if (isset($node->biblio_contributors[1])) {
    $query['as_sauthors'] = $node->biblio_contributors[1][0]['lastname'];
  }
  $query['as_occt'] = 'any';
  $query['as_epq'] = '';

  // exact phrase
  $query['as_oq'] = '';

  // at least one of the words
  $query['as_eq'] = '';

  // without the words
  $query['as_publication'] = '';

  // published in
  $query['as_ylo'] = '';

  // lower date in date range
  $query['as_yhi'] = '';

  // upper date in date range
  $query['as_sdtAAP'] = 1;

  //Search articles in all subject areas
  $query['as_sdtp'] = 1;

  //include patents
  $attrs = array(
    'title' => t("Click to search Google Scholar for this entry"),
  );
  if (variable_get('biblio_links_target_new_window', null)) {
    $attrs = array_merge($attrs, array(
      'target' => '_blank',
    ));
  }
  return array(
    'title' => t('Google Scholar'),
    'href' => 'http://scholar.google.com/scholar',
    'attributes' => $attrs,
    'query' => $query,
  );
}

/**
 *
 *
 * @param $form
 *
 * @ingroup themeable
 */
function theme_biblio_contributors($form) {
  $rows = array();
  if ($form['#hideRole']) {
    $headers = array(
      '',
      t('Name'),
      t('Weight'),
    );
  }
  else {
    $headers = array(
      '',
      t('Name'),
      t('Role'),
      t('Weight'),
    );
  }
  drupal_add_tabledrag($form['#id'], 'order', 'sibling', 'rank');
  foreach (element_children($form) as $key) {

    // No need to print the field title every time.
    unset($form[$key]['name']['#title'], $form[$key]['auth_type']['#title']);

    // Add class to group weight fields for drag and drop.
    $form[$key]['rank']['#attributes']['class'] = 'rank';

    // Build the table row.
    // @todo: Explain why first element of row is set to empty string.
    $row = array(
      '',
    );
    $row[] = array(
      'data' => drupal_render($form[$key]['name']),
      'class' => 'biblio-contributor',
    );
    if (!$form['#hideRole']) {
      $row[] = array(
        'data' => drupal_render($form[$key]['auth_type']),
        'class' => 'biblio-contributor-type',
      );
    }
    $row[] = drupal_render($form[$key]['rank']);
    $rows[] = array(
      'data' => $row,
      'class' => 'draggable',
    );
  }
  $output = theme('table', $headers, $rows, array(
    'id' => $form['#id'],
  ));
  $output .= drupal_render($form);
  return $output;
}

/**
 *
 *
 * This function creates a string of letters (A - Z), which
 * depending on the sorting are either linked to author or title
 * filters i.e. clicking on the A when in the listing is sorted by
 * authors will bring up a list of all the entries where the first
 * character of the primary authors last name is "A"
 *
 * @param string $type
 *   (optional) Either 'author' or 'title' with a default of 'author'.
 * @param $current
 *   (optional)
 * @param $path
 *   (optional)
 *
 * @ingroup themeable
 */
function theme_biblio_alpha_line($type = 'author', $current = NULL, $path = NULL) {
  $options = array();
  $base = variable_get('biblio_base', 'biblio');
  $all = '';
  switch ($type) {
    case 'authors':
    case 'keywords':
      $path = ord(substr($_GET['q'], -1)) > 97 ? $_GET['q'] . "/" : substr($_GET['q'], 0, -1);
      $all = '[' . l(t('Show ALL'), substr($_GET['q'], 0, -2)) . ']';
      break;
    case 'keyword':
      $options['query'] = array(
        'sort' => 'keyword',
      );
      $path = "{$base}/keyword/";
      $all_query['query'] = array(
        'sort' => 'keyword',
        'order' => $_GET['order'],
      );
      $all = '[' . l(t('Show ALL'), $base, $all_query) . ']';
      break;
    case 'author':
      $options['query'] = array(
        'sort' => 'author',
      );
      $path = "{$base}/ag/";
      $all_query['query'] = array(
        'sort' => 'author',
        'order' => $_GET['order'],
      );
      $all = '[' . l(t('Show ALL'), $base, $all_query) . ']';
      break;
    case 'title':
      $options['query'] = array(
        'sort' => 'title',
      );
      $path = "{$base}/tg/";
      $all_query['query'] = array(
        'sort' => 'title',
        'order' => $_GET['order'],
      );
      $all = '[' . l(t('Show ALL'), $base, $all_query) . ']';
      break;
    default:
      if (!isset($_GET['sort']) || $_GET['sort'] == 'year' || $_GET['sort'] == 'type') {
        return;
      }
      $inline = $inline ? "/inline" : "";
      if (isset($_GET['sort'])) {
        $options['query']['sort'] = $_GET['sort'];
        if ($_GET['sort'] == 'author') {
          $path = "{$base}/ag/";
        }
        if ($_GET['sort'] == 'title') {
          $path = "{$base}/tg/";
        }
      }
      break;
  }
  if (isset($_GET['order'])) {
    $options['query']['order'] = $_GET['order'];
  }
  $output = '<div class="biblio-alpha-line">';
  for ($i = 65; $i <= 90; $i++) {
    if ($i == ord(strtoupper($current))) {
      $output .= '<b>[' . chr($i) . ']</b>&nbsp;';
    }
    else {
      $output .= l(chr($i), $path . chr($i), $options) . '&nbsp;';
    }
  }
  if ($current) {
    $output .= '&nbsp;&nbsp;' . $all;
  }
  $output .= '</div>';
  return $output;
}

/**
 * Themes the author editing form
 *
 * @param $form
 * @return rendered form
 *
 * @ingroup themeable
 */
function theme_biblio_admin_author_edit_form($form) {
  $rows = array();
  $header = array();
  $rows[] = array(
    array(
      'data' => drupal_render($form['prefix']),
    ),
    array(
      'data' => drupal_render($form['firstname']),
    ),
    array(
      'data' => drupal_render($form['initials']),
    ),
    array(
      'data' => drupal_render($form['lastname']),
    ),
    array(
      'data' => drupal_render($form['suffix']),
    ),
  );
  $rows[] = array(
    array(
      'data' => drupal_render($form['name']) . drupal_render($form['literal']),
      'colspan' => 5,
    ),
  );
  $rows[] = array(
    array(
      'data' => drupal_render($form['affiliation']),
      'colspan' => 5,
    ),
  );
  $rows[] = array(
    array(
      'data' => drupal_render($form['drupal_uid']),
      'colspan' => 5,
    ),
  );
  $output = theme('table', $header, $rows);
  $output .= drupal_render($form['merge']);
  $output .= drupal_render($form['link']);
  $output .= drupal_render($form);
  return $output;
}

/**
 *
 *
 * @ingroup themeable
 */
function theme_biblio_admin_orphans_form($form) {

  // If there are any orphans, then $form['name'] contains a list of the author names
  $has_items = isset($form['name']) && is_array($form['name']);
  $select_header = $has_items ? theme('table_select_header_cell') : '';
  $header = array(
    $select_header,
    t('Author Name'),
    t('Affiliation'),
  );
  $output = '';
  $output .= drupal_render($form['submit']);
  if ($has_items) {
    foreach (element_children($form['name']) as $key) {
      $row = array();
      $row[] = drupal_render($form['authors'][$key]);
      $row[] = drupal_render($form['name'][$key]);
      $row[] = drupal_render($form['affiliation'][$key]);
      $rows[] = $row;
    }
  }
  else {
    $rows[] = array(
      array(
        'data' => t('There are no orphaned authors in the database.'),
        'colspan' => '3',
      ),
    );
  }
  $output .= theme('table', $header, $rows);
  if ($form['pager']['#value']) {
    $output .= drupal_render($form['pager']);
  }
  $output .= drupal_render($form);
  return $output;
}

/**
 *
 *
 *
 * @ingroup themeable
 */
function theme_biblio_admin_keyword_orphans_form($form) {

  // If there are any orphans, then $form['name'] contains a list of the author names
  $has_items = isset($form['keyword']) && is_array($form['keyword']);
  $select_header = $has_items ? theme('table_select_header_cell') : '';
  $header = array(
    $select_header,
    t('Keyword'),
  );
  $output = '';
  $output .= drupal_render($form['submit']);
  if ($has_items) {
    foreach (element_children($form['keyword']) as $key) {
      $row = array();
      $row[] = drupal_render($form['keywords'][$key]);
      $row[] = drupal_render($form['keyword'][$key]);
      $rows[] = $row;
    }
  }
  else {
    $rows[] = array(
      array(
        'data' => t('There are no orphaned keywords in the database.'),
        'colspan' => '2',
      ),
    );
  }
  $output .= theme('table', $header, $rows);
  if ($form['pager']['#value']) {
    $output .= drupal_render($form['pager']);
  }
  $output .= drupal_render($form);
  return $output;
}

Functions

Name	Description
biblio_format_authors
biblio_openURL
theme_biblio_admin_author_edit_form	Themes the author editing form
theme_biblio_admin_keyword_orphans_form
theme_biblio_admin_orphans_form
theme_biblio_admin_types_edit_form	Creates the HTML for the biblio_admin_types_edit_form().
theme_biblio_alpha_line	This function creates a string of letters (A - Z), which depending on the sorting are either linked to author or title filters i.e. clicking on the A when in the listing is sorted by authors will bring up a list of all the entries where the…
theme_biblio_authors
theme_biblio_author_link	Returns HTML for an author link.
theme_biblio_coin_button
theme_biblio_contributors
theme_biblio_download_links	Creates HTML-formatted string for biblio download links.
theme_biblio_entry
theme_biblio_export_links	Creates a group of links for the various export functions.
theme_biblio_filters
theme_biblio_format_authors
theme_biblio_form_filter
theme_biblio_long	DEPRECIATED! this was the original output format which is not to flexable it will be removed TODO: remove this function
theme_biblio_openurl
theme_biblio_page_number	Creates HTML string for a biblio page number or range.
theme_biblio_style	Applies a "style" function to a single node.
theme_biblio_tabular
theme_google_scholar_link
_biblio_get_latin1_regex
_biblio_get_regex_patterns
_biblio_get_utf8_regex