class PARSEENTRIES in Bibliography Module 5

Hierarchy

• class \PARSEENTRIES

File

bibtexParse/PARSEENTRIES.php, line 134

class PARSEENTRIES {
  function PARSEENTRIES() {
    require_once drupal_get_path('module', 'biblio') . '/bibtexParse/transtab_latex_unicode.inc.php';
    $this->preamble = $this->strings = $this->undefinedStrings = $this->entries = array();
    $this->count = 0;
    $this->fieldExtract = TRUE;
    $this->removeDelimit = TRUE;
    $this->expandMacro = FALSE;
    $this->parseFile = TRUE;
    $this->outsideEntry = TRUE;
    $this->translate_latex = TRUE;
  }

  // Open bib file
  function openBib($file) {
    if (!is_file($file)) {
      die;
    }
    $this->fid = fopen($file, 'r');
    $this->parseFile = TRUE;
  }

  // Load a bibtex string to parse it
  function loadBibtexString($bibtex_string) {
    if (is_string($bibtex_string)) {

      //$bibtex_string = $this->searchReplaceText($this->transtab_latex_unicode, $bibtex_string, false);
      $this->bibtexString = explode("\n", $bibtex_string);
    }
    else {
      $this->bibtexString = $bibtex_string;
    }
    $this->parseFile = FALSE;
    $this->currentLine = 0;
  }
  function searchReplaceText($searchReplaceActionsArray, $sourceString, $includesSearchPatternDelimiters = FALSE) {
    set_time_limit(30);

    // reset the script timer to avoid timeouts
    // apply the search & replace actions defined in '$searchReplaceActionsArray' to the text passed in '$sourceString':
    foreach ($searchReplaceActionsArray as $searchString => $replaceString) {
      if (!$includesSearchPatternDelimiters) {
        $searchString = "/" . $searchString . "/";
      }

      // add search pattern delimiters
      if (preg_match($searchString, $sourceString)) {
        $sourceString = preg_replace($searchString, $replaceString, $sourceString);
      }
    }
    return $sourceString;
  }

  // Set strings macro
  function loadStringMacro($macro_array) {
    $this->userStrings = $macro_array;
  }

  // Close bib file
  function closeBib() {
    fclose($this->fid);
  }

  // Get a non-empty line from the bib file or from the bibtexString
  function getLine() {
    if ($this->parseFile) {
      if (!feof($this->fid)) {
        do {
          $line = trim(fgets($this->fid));
        } while (!feof($this->fid) && !$line);
        return $line;
      }
      return FALSE;
    }
    else {
      do {
        $line = trim($this->bibtexString[$this->currentLine]);
        $this->currentLine++;
      } while ($this->currentLine < count($this->bibtexString) && !$line);
      return $line;
    }
  }

  // Extract value part of @string field enclosed by double-quotes or braces.
  // The string may be expanded with previously-defined strings
  function extractStringValue($string) {

    // $string contains a end delimiter, remove it
    $string = trim(substr($string, 0, strlen($string) - 1));

    // remove delimiters and expand
    $string = $this
      ->removeDelimitersAndExpand($string);
    return $string;
  }

  // Extract a field
  function fieldSplit($seg) {

    // echo "**** ";print_r($seg);echo "<BR>";
    // handle fields like another-field = {}
    $array = preg_split("/,\\s*([-_.:,a-zA-Z0-9]+)\\s*={1}\\s*/U", $seg, PREG_SPLIT_DELIM_CAPTURE);

    // echo "**** ";print_r($array);echo "<BR>";

    //$array = preg_split("/,\s*(\w+)\s*={1}\s*/U", $seg, PREG_SPLIT_DELIM_CAPTURE);
    if (!array_key_exists(1, $array)) {
      return array(
        $array[0],
        FALSE,
      );
    }
    return array(
      $array[0],
      $array[1],
    );
  }

  // Extract and format fields
  function reduceFields($oldString) {

    // 03/05/2005 G. Gardey. Do not remove all occurences, juste one
    // * correctly parse an entry ended by: somefield = {aValue}}
    $lg = strlen($oldString);
    if ($oldString[$lg - 1] == "}" || $oldString[$lg - 1] == ")" || $oldString[$lg - 1] == ",") {
      $oldString = substr($oldString, 0, $lg - 1);
    }

    // $oldString = rtrim($oldString, "}),");
    $split = preg_split("/=/", $oldString, 2);
    $string = $split[1];
    while ($string) {
      list($entry, $string) = $this
        ->fieldSplit($string);
      $values[] = $entry;
    }
    foreach ($values as $value) {
      $pos = strpos($oldString, $value);
      $oldString = substr_replace($oldString, '', $pos, strlen($value));
    }
    $rev = strrev(trim($oldString));
    if ($rev[0] != ',') {
      $oldString .= ',';
    }
    $keys = preg_split("/=,/", $oldString);

    // 22/08/2004 - Mark Grimshaw
    // I have absolutely no idea why this array_pop is required but it is.  Seems to always be
    // an empty key at the end after the split which causes problems if not removed.
    array_pop($keys);
    foreach ($keys as $key) {
      $value = trim(array_shift($values));
      $rev = strrev($value);

      // remove any dangling ',' left on final field of entry
      if ($rev[0] == ',') {
        $value = rtrim($value, ",");
      }
      if (!$value) {
        continue;
      }

      // 21/08/2004 G.Gardey -> expand macro
      // Don't remove delimiters now needs to know if the value is a string macro
      // $this->entries[$this->count][strtolower(trim($key))] = trim($this->removeDelimiters(trim($value)));
      $key = strtolower(trim($key));
      $value = trim($value);
      $this->entries[$this->count][$key] = $value;
    }

    // echo "**** ";print_r($this->entries[$this->count]);echo "<BR>";
  }

  // Start splitting a bibtex entry into component fields.
  // Store the entry type and citation.
  function fullSplit($entry) {
    $matches = preg_split("/@(.*)[{(](.*),/U", $entry, 2, PREG_SPLIT_DELIM_CAPTURE);
    $this->entries[$this->count]['bibtexEntryType'] = strtolower(trim($matches[1]));

    // sometimes a bibtex entry will have no citation key
    if (preg_match("/=/", $matches[2])) {

      // this is a field
      $matches = preg_split("/@(.*)\\s*[{(](.*)/U", $entry, 2, PREG_SPLIT_DELIM_CAPTURE);
    }

    // print_r($matches); print "<P>";
    $this->entries[$this->count]['bibtexCitation'] = $matches[2];
    $this
      ->reduceFields($matches[3]);
  }

  // Grab a complete bibtex entry
  function parseEntry($entry) {
    $entry = $this->translate_latex ? $this
      ->searchReplaceText($this->transtab_latex_unicode, $entry, false) : $entry;
    $count = 0;
    $lastLine = FALSE;
    if (preg_match("/@(.*)([{(])/U", preg_quote($entry), $matches)) {
      if (!array_key_exists(1, $matches)) {
        return $lastLine;
      }
      if (preg_match("/string/i", trim($matches[1]))) {
        $this->strings[] = $entry;
      }
      else {
        if (preg_match("/preamble/i", trim($matches[1]))) {
          $this->preamble[] = $entry;
        }
        else {
          if (preg_match("/comment/i", $matches[1])) {
          }
          else {
            if ($this->fieldExtract) {
              $this
                ->fullSplit($entry);
            }
            else {
              $this->entries[$this->count] = $entry;
            }
            $this->count++;
          }
        }
      }
      return $lastLine;
    }
  }

  // Remove delimiters from a string
  function removeDelimiters($string) {
    if ($string && $string[0] == "\"") {
      $string = substr($string, 1);
      $string = substr($string, 0, -1);
    }
    else {
      if ($string && $string[0] == "{") {
        if (strlen($string) > 0 && $string[strlen($string) - 1] == "}") {
          $string = substr($string, 1);
          $string = substr($string, 0, -1);
        }
      }
      else {
        if (!is_numeric($string) && !array_key_exists($string, $this->strings) && array_search($string, $this->undefinedStrings) === FALSE) {
          $this->undefinedStrings[] = $string;

          // Undefined string that is not a year etc.
          return '';
        }
      }
    }
    return $string;
  }

  // This function works like explode('#',$val) but has to take into account whether
  // the character # is part of a string (i.e., is enclosed into "..." or {...} )
  // or defines a string concatenation as in @string{ "x # x" # ss # {xx{x}x} }
  function explodeString($val) {
    $openquote = $bracelevel = $i = $j = 0;
    while ($i < strlen($val)) {
      if ($val[$i] == '"') {
        $openquote = !$openquote;
      }
      elseif ($val[$i] == '{') {
        $bracelevel++;
      }
      elseif ($val[$i] == '}') {
        $bracelevel--;
      }
      elseif ($val[$i] == '#' && !$openquote && !$bracelevel) {
        $strings[] = substr($val, $j, $i - $j);
        $j = $i + 1;
      }
      $i++;
    }
    $strings[] = substr($val, $j);
    return $strings;
  }

  // This function receives a string and a closing delimiter '}' or ')'
  // and looks for the position of the closing delimiter taking into
  // account the following Bibtex rules:
  //  * Inside the braces, there can arbitrarily nested pairs of braces,
  //    but braces must also be balanced inside quotes!
  //  * Inside quotes, to place the " character it is not sufficient
  //    to simply escape with \": Quotes must be placed inside braces.
  function closingDelimiter($val, $delimitEnd) {

    //  echo "####>$delimitEnd $val<BR>";
    $openquote = $bracelevel = $i = $j = 0;
    while ($i < strlen($val)) {

      // a '"' found at brace level 0 defines a value such as "ss{\"o}ss"
      if ($val[$i] == '"' && !$bracelevel) {
        $openquote = !$openquote;
      }
      elseif ($val[$i] == '{') {
        $bracelevel++;
      }
      elseif ($val[$i] == '}') {
        $bracelevel--;
      }
      if ($val[$i] == $delimitEnd && !$openquote && !$bracelevel) {
        return $i;
      }
      $i++;
    }

    // echo "--> $bracelevel, $openquote";
    return 0;
  }

  // Remove enclosures around entry field values.  Additionally, expand macros if flag set.
  function removeDelimitersAndExpand($string, $inpreamble = FALSE) {

    // only expand the macro if flag set, if strings defined and not in preamble
    if (!$this->expandMacro || empty($this->strings) || $inpreamble) {
      $string = $this
        ->removeDelimiters($string);
    }
    else {
      $stringlist = $this
        ->explodeString($string);
      $string = "";
      foreach ($stringlist as $str) {

        // trim the string since usually # is enclosed by spaces
        $str = trim($str);

        // replace the string if macro is already defined
        // strtolower is used since macros are case insensitive
        if (isset($this->strings[strtolower($str)])) {
          $string .= $this->strings[strtolower($str)];
        }
        else {
          $string .= $this
            ->removeDelimiters(trim($str));
        }
      }
    }
    return $string;
  }

  // This function extract entries taking into account how comments are defined in BibTeX.
  // BibTeX splits the file in two areas: inside an entry and outside an entry, the delimitation
  // being indicated by the presence of a @ sign. When this character is met, BibTex expects to
  // find an entry. Before that sign, and after an entry, everything is considered a comment!
  function extractEntries() {
    $inside = $possibleEntryStart = FALSE;
    $entry = "";
    while ($line = $this
      ->getLine()) {
      if ($possibleEntryStart) {
        $line = $possibleEntryStart . $line;
      }
      if (!$inside && strchr($line, "@")) {

        // throw all characters before the '@'
        $line = strstr($line, '@');
        if (!strchr($line, "{") && !strchr($line, "(")) {
          $possibleEntryStart = $line;
        }
        elseif (preg_match("/@.*([{(])/U", preg_quote($line), $matches)) {
          $inside = TRUE;
          if ($matches[1] == '{') {
            $delimitEnd = '}';
          }
          else {
            $delimitEnd = ')';
          }
          $possibleEntryStart = FALSE;
        }
      }
      if ($inside) {
        $entry .= " " . $line;
        if ($j = $this
          ->closingDelimiter($entry, $delimitEnd)) {

          // all characters after the delimiter are thrown but the remaining
          // characters must be kept since they may start the next entry !!!
          $lastLine = substr($entry, $j + 1);
          $entry = substr($entry, 0, $j + 1);

          // Strip excess whitespaces from the entry
          $entry = preg_replace('/\\s\\s+/', ' ', $entry);
          $this
            ->parseEntry($entry);
          $entry = strchr($lastLine, "@");
          if ($entry) {
            $inside = TRUE;
          }
          else {
            $inside = FALSE;
          }
        }
      }
    }
  }

  // Return arrays of entries etc. to the calling process.
  function returnArrays() {
    foreach ($this->preamble as $value) {
      preg_match("/.*?[{(](.*)/", $value, $matches);
      $preamble = substr($matches[1], 0, -1);
      $preambles['bibtexPreamble'] = trim($this
        ->removeDelimitersAndExpand(trim($preamble), TRUE));
    }
    if (isset($preambles)) {
      $this->preamble = $preambles;
    }
    if ($this->fieldExtract) {

      // Next lines must take into account strings defined by previously-defined strings
      $strings = $this->strings;

      // $this->strings is initialized with strings provided by user if they exists
      // it is supposed that there are no substitutions to be made in the user strings, i.e., no #
      $this->strings = isset($this->userStrings) ? $this->userStrings : array();
      foreach ($strings as $value) {

        // changed 21/08/2004 G. Gardey
        // 23/08/2004 Mark G. account for comments on same line as @string - count delimiters in string value
        $value = trim($value);
        $matches = preg_split("/@\\s*string\\s*([{(])/i", $value, 2, PREG_SPLIT_DELIM_CAPTURE);
        $delimit = $matches[1];
        $matches = preg_split("/=/", $matches[2], 2, PREG_SPLIT_DELIM_CAPTURE);

        // macros are case insensitive
        $this->strings[strtolower(trim($matches[0]))] = $this
          ->extractStringValue($matches[1]);
      }
    }

    // changed 21/08/2004 G. Gardey
    // 22/08/2004 Mark Grimshaw - stopped useless looping.
    // removeDelimit and expandMacro have NO effect if !$this->fieldExtract
    if ($this->removeDelimit || $this->expandMacro && $this->fieldExtract) {
      for ($i = 0; $i < count($this->entries); $i++) {
        foreach ($this->entries[$i] as $key => $value) {

          // 02/05/2005 G. Gardey don't expand macro for bibtexCitation
          // and bibtexEntryType
          if ($key != 'bibtexCitation' && $key != 'bibtexEntryType') {
            $this->entries[$i][$key] = trim($this
              ->removeDelimitersAndExpand($this->entries[$i][$key]));
          }
        }
      }
    }

    // EZ: Remove this to be able to use the same instance for parsing several files,
    // e.g., parsing a entry file with its associated abbreviation file
    //    if(empty($this->preamble))
    //      $this->preamble = FALSE;
    //    if(empty($this->strings))
    //      $this->strings = FALSE;
    //    if(empty($this->entries))
    //      $this->entries = FALSE;
    return array(
      $this->preamble,
      $this->strings,
      $this->entries,
      $this->undefinedStrings,
    );
  }
  function bib2node(&$node_array, $node) {
    list($preamble, $strings, $entries, $undefinedStrings) = $this
      ->returnArrays();
    foreach ($entries as $entry) {
      $node_id = array_push($node_array, $node) - 1;
      switch ($entry['bibtexEntryType']) {
        case article:
          $node_array[$node_id]['biblio_type'] = 102;
          break;
        case book:
          $node_array[$node_id]['biblio_type'] = 100;
          break;
        case booklet:
        case inbook:
          $node_array[$node_id]['biblio_type'] = 101;
          break;
        case conference:
          $node_array[$node_id]['biblio_type'] = 103;
          break;
        case incollection:
          $node_array[$node_id]['biblio_type'] = 100;
          break;
        case inproceedings:
          $node_array[$node_id]['biblio_type'] = 103;
          break;
        case manual:
          $node_array[$node_id]['biblio_type'] = 129;
          break;
        case mastersthesis:
          $node_array[$node_id]['biblio_type'] = 108;
          break;
        case misc:
          $node_array[$node_id]['biblio_type'] = 129;
          break;
        case phdthesis:
          $node_array[$node_id]['biblio_type'] = 108;
          break;
        case proceedings:
          $node_array[$node_id]['biblio_type'] = 104;
          break;
        case techreport:
          $node_array[$node_id]['biblio_type'] = 109;
          break;
        case unpublished:
          $node_array[$node_id]['biblio_type'] = 124;
          break;
      }
      if (!empty($entry['author'])) {
        $node_array[$node_id]['biblio_authors'] = preg_replace("/\\s(and|&)\\s/i", "; ", $entry['author']);
      }

      /*
      $creator = new PARSECREATORS();
      $creatorArray = $creator->parse($entry['author']);

      foreach ($creatorArray as $auth){
      $node_array[$node_id]['biblio_authors'] .= (empty($node_array[$node_id]['biblio_authors'])) ? "":"; " ;
      $node_array[$node_id]['biblio_authors'] .= (!empty($auth['lastname'])) ? $auth['lastname'].((!empty($auth['firstname']) || !empty($auth['initials']) || !empty($auth['prefix']) )?', ':''):'' ;
      $node_array[$node_id]['biblio_authors'] .= (!empty($auth['prefix'])) ? $auth['prefix'].' ':'' ;
      $node_array[$node_id]['biblio_authors'] .= (!empty($auth['firstname'])) ? $auth['firstname'].' ':'' ;
      $node_array[$node_id]['biblio_authors'] .= (!empty($auth['initials'])) ? $auth['initials'].'. ':'' ;

      }
      }
      */
      if (!empty($entry['bibtexCitation'])) {
        $node_array[$node_id]['biblio_citekey'] = $entry['bibtexCitation'];
      }
      if (!empty($entry['editor'])) {
        $node_array[$node_id]['biblio_secondary_authors'] = $entry['editor'];
      }
      if (!empty($entry['journal'])) {
        $node_array[$node_id]['biblio_secondary_title'] = $entry['journal'];
      }
      if (!empty($entry['booktitle'])) {
        $node_array[$node_id]['biblio_secondary_title'] = $entry['booktitle'];
      }
      if (!empty($entry['series'])) {
        $node_array[$node_id]['biblio_secondary_title'] = $entry['series'];
      }
      if (!empty($entry['volume'])) {
        $node_array[$node_id]['biblio_volume'] = $entry['volume'];
      }
      if (!empty($entry['number'])) {
        $node_array[$node_id]['biblio_number'] = $entry['number'];
      }
      if (!empty($entry['year'])) {
        $node_array[$node_id]['biblio_year'] = $entry['year'];
      }
      if (!empty($entry['note'])) {
        $node_array[$node_id]['biblio_notes'] = $entry['note'];
      }
      if (!empty($entry['month'])) {
        $node_array[$node_id]['biblio_date'] = $entry['month'];
      }
      if (!empty($entry['pages'])) {
        $node_array[$node_id]['biblio_pages'] = $entry['pages'];
      }
      if (!empty($entry['publisher'])) {
        $node_array[$node_id]['biblio_publisher'] = $entry['publisher'];
      }
      if (!empty($entry['organization'])) {
        $node_array[$node_id]['biblio_publisher'] = $entry['organization'];
      }
      if (!empty($entry['school'])) {
        $node_array[$node_id]['biblio_publisher'] = $entry['school'];
      }
      if (!empty($entry['institution'])) {
        $node_array[$node_id]['biblio_publisher'] = $entry['institution'];
      }
      if (!empty($entry['title'])) {
        $node_array[$node_id]['title'] = $entry['title'];
      }
      if (!empty($entry['type'])) {
        $node_array[$node_id]['biblio_type_of_work'] = $entry['type'];
      }
      if (!empty($entry['edition'])) {
        $node_array[$node_id]['biblio_edition'] = $entry['edition'];
      }
      if (!empty($entry['chapter'])) {
        $node_array[$node_id]['biblio_section'] = $entry['chapter'];
      }
      if (!empty($entry['address'])) {
        $node_array[$node_id]['biblio_place_published'] = $entry['address'];
      }
      if (!empty($entry['abstract'])) {
        $node_array[$node_id]['biblio_abst_e'] = $entry['abstract'];
      }
      if (!empty($entry['keywords'])) {
        $node_array[$node_id]['biblio_keywords'] = $entry['keywords'];
      }
      if (!empty($entry['isbn'])) {
        $node_array[$node_id]['biblio_isbn'] = $entry['isbn'];
      }
      if (!empty($entry['url'])) {
        $node_array[$node_id]['biblio_url'] = $entry['url'];
      }
    }
  }

}

Members

Name	Modifiers	Type	Description	Overrides
PARSEENTRIES::bib2node		function
PARSEENTRIES::closeBib		function
PARSEENTRIES::closingDelimiter		function
PARSEENTRIES::explodeString		function
PARSEENTRIES::extractEntries		function
PARSEENTRIES::extractStringValue		function
PARSEENTRIES::fieldSplit		function
PARSEENTRIES::fullSplit		function
PARSEENTRIES::getLine		function
PARSEENTRIES::loadBibtexString		function
PARSEENTRIES::loadStringMacro		function
PARSEENTRIES::openBib		function
PARSEENTRIES::PARSEENTRIES		function
PARSEENTRIES::parseEntry		function
PARSEENTRIES::reduceFields		function
PARSEENTRIES::removeDelimiters		function
PARSEENTRIES::removeDelimitersAndExpand		function
PARSEENTRIES::returnArrays		function
PARSEENTRIES::searchReplaceText		function