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6 files declare their use of Graph in Drupal 9

ConfigDependencyManager.php in core/lib/Drupal/Core/Config/Entity/ConfigDependencyManager.php
GraphTest.php in core/tests/Drupal/Tests/Component/Graph/GraphTest.php
MigrationPluginManager.php in core/modules/migrate/src/Plugin/MigrationPluginManager.php
ModuleHandler.php in core/lib/Drupal/Core/Extension/ModuleHandler.php
update.inc in core/includes/update.inc
Drupal database update API.
WorkspaceRepository.php in core/modules/workspaces/src/WorkspaceRepository.php