biblio_style_ama.inc in Bibliography Module 7
Same filename and directory in other branches
AMA style.
Original File: ./cite/styles/cite_AMA.php Original Author(s): Matthias Steffens <mailto:refbase@extracts.de> and Richard Karnesky <mailto:karnesky@gmail.com>
This is a citation style file (which must reside within the 'cite/styles/' sub-directory of your refbase root directory). It contains a version of the 'citeRecord()' function that outputs a reference list from selected records according to the citation style used by the American Medical Association (AMA)
based on 'cite_Chicago.php'
@todo abstracts, conference proceedings, patents, reports
- book/volume/report/etc titles should be formatted in heading caps
- don't add a dot if the abbreviated journal (or series title) ends with a dot!
Modified for use in biblio by Ron Jerome.
File
styles/biblio_style_ama.incView source
<?php
/**
* @file
* AMA style.
*
* Original File: ./cite/styles/cite_AMA.php
* Original Author(s): Matthias Steffens <mailto:refbase@extracts.de> and
* Richard Karnesky <mailto:karnesky@gmail.com>
*
* This is a citation style file (which must reside within the 'cite/styles/' sub-directory of your refbase root directory). It contains a
* version of the 'citeRecord()' function that outputs a reference list from selected records according to the citation style used by
* the American Medical Association (AMA)
*
* based on 'cite_Chicago.php'
*
* @todo abstracts, conference proceedings, patents, reports
* - book/volume/report/etc titles should be formatted in heading caps
* - don't add a dot if the abbreviated journal (or series title) ends with a dot!
*
* Modified for use in biblio by Ron Jerome.
*/
/**
* Get the style information.
*
* @return
* The name of the style
*/
function biblio_style_ama_info() {
return array(
'ama' => 'American Medical Association (AMA)',
);
}
/**
*
*/
function biblio_style_ama_author_options() {
$author_options = array(
'BetweenAuthorsDelimStandard' => ', ',
'BetweenAuthorsDelimLastAuthor' => ', ',
'AuthorsInitialsDelimFirstAuthor' => ' ',
'AuthorsInitialsDelimStandard' => ' ',
'betweenInitialsDelim' => '',
'initialsBeforeAuthorFirstAuthor' => FALSE,
'initialsBeforeAuthorStandard' => FALSE,
'shortenGivenNames' => TRUE,
'numberOfAuthorsTriggeringEtAl' => 6,
'includeNumberOfAuthors' => 3,
'customStringAfterFirstAuthors' => ', et al.',
'encodeHTML' => TRUE,
);
return $author_options;
}
/**
*
*/
function biblio_style_ama($node) {
module_load_include('inc', 'biblio', '/includes/biblio.contributors');
$output = '';
$markupPatternsArray = array(
"italic-prefix" => "<i>",
"italic-suffix" => "<\\/i>",
"endash" => '-',
);
$author_options = biblio_style_ama_author_options();
$authors = biblio_get_contributor_category($node->biblio_contributors, 1);
$editors = biblio_get_contributor_category($node->biblio_contributors, 2);
if (!empty($authors)) {
$authors = theme('biblio_format_authors', array(
'contributors' => $authors,
'options' => $author_options,
));
}
// $editors = theme('biblio_format_authors', array('contributors' => $node->biblio_contributors[2], 'options' => $author_options, 'inline' => $inline));
// if (empty($authors)) $authors = theme('biblio_authors', $node->biblio_contributors[5], 'mla', 5, $inline); // if no authors substitute corp author if available
// if (empty($authors)) $authors = '[' . t('Anonymous') . ']'; // use anonymous if we still have nothing.
// $output .= '<span class="biblio-authors">' . $authors . "</span>. \n";.
if (!empty($node->biblio_citekey) && variable_get('biblio_display_citation_key', 0)) {
$output .= '[' . check_plain($node->biblio_citekey) . '] ';
}
switch ($node->biblio_type) {
// Journal Article.
case 102:
// Newspaper Article.
case 105:
// Magazine Article.
case 106:
if (!empty($authors)) {
$output .= '<span class="biblio-authors">';
$output .= $authors;
if (!preg_match("/\\. *\$/", $authors)) {
$output .= ".";
}
$output .= "</span>";
}
// Title.
if (!empty($node->title)) {
if (!empty($authors)) {
$output .= " ";
}
$output .= '"';
$output .= '<span class="biblio-title-ama">';
$url = biblio_get_title_url_info($node);
$output .= l($node->title, $url['link'], $url['options']);
$output .= "</span>";
if (!preg_match("/[?!.]\$/", $node->title)) {
$output .= ".";
}
$output .= '"';
}
// From here on we'll assume that at least either the 'author' or the 'title' field did contain some contents
// if this is not the case, the output string will begin with a space. However, any preceding/trailing whitespace will be removed at the cleanup stage (see below)
// Abbreviated journal name.
if (!empty($node->biblio_alternate_title)) {
$output .= " <i>" . $node->biblio_alternate_title . "</i>";
}
elseif (!empty($node->biblio_secondary_title)) {
$output .= " <i>" . $node->biblio_secondary_title . "</i>";
}
// For newspaper articles (and magazine articles if w/o volume number), volume (=month) and issue (=day) information is printed before the year.
if ($node->biblio_type == 105 || $node->biblio_type == 106 and !preg_match("/^\\d+\$/", $node->biblio_volume)) {
// Volume (=month)
if (!empty($node->biblio_volume)) {
$output .= ". " . $node->biblio_volume;
}
// Issue (=day)
if (!empty($node->biblio_issue)) {
$output .= " " . $node->biblio_issue;
}
// Year.
if (!empty($node->biblio_year)) {
$output .= ", " . $node->biblio_year;
}
}
else {
// Year.
if (!empty($node->biblio_year)) {
$output .= ". " . $node->biblio_year;
}
if (!empty($node->biblio_volume) || !empty($node->biblio_issue)) {
$output .= ";";
}
// Volume.
if (!empty($node->biblio_volume)) {
$output .= $node->biblio_volume;
}
// Issue.
if (!empty($node->biblio_issue)) {
$output .= "(" . $node->biblio_issue . ")";
}
}
// Pages.
if (!empty($node->biblio_pages)) {
// Only add ": " if either year, volume, issue, abbrev_journal or publication isn't empty.
if (!empty($node->biblio_year) || !empty($node->biblio_volume) || !empty($node->biblio_issue) || !empty($node->biblio_alternate_title) || !empty($node->biblio_secondary_title)) {
$output .= ":";
}
// Function 'formatPageInfo()' is defined in 'cite.inc.php'.
$output .= theme('biblio_page_number', array(
'orig_page_info' => $node->biblio_pages,
'page_range_delim' => $markupPatternsArray["endash"],
));
}
// This record refers to an online article.
if (isset($node->online_publication)) {
// Append an optional string (given in 'online_citation') plus the current date and the DOI (or URL):
$today = date("F j, Y");
// online_citation.
if (!empty($row['online_citation'])) {
// Only add ":" or "," if either year, volume, issue, abbrev_journal or publication isn't empty.
if (!empty($node->biblio_year) || !empty($node->biblio_volume) || !empty($node->biblio_issue) || !empty($node->biblio_alternate_title) || !empty($node->biblio_secondary_title)) {
if (empty($node->biblio_pages)) {
// Print instead of pages.
$output .= ":";
}
else {
// Append to pages.
$output .= ",";
}
}
$output .= $row['online_citation'];
}
// Doi.
if (!empty($row['doi'])) {
// Only add "." if online_citation isn't empty, or else if either year, volume, issue, abbrev_journal or publication isn't empty.
if (!empty($row['online_citation']) or empty($row['online_citation']) and !empty($node->biblio_year) || !empty($node->biblio_volume) || !empty($node->biblio_issue) || !empty($node->biblio_alternate_title) || !empty($node->biblio_secondary_title)) {
$output .= ".";
}
if ($encodeHTML) {
$output .= " " . encodeHTML("http://dx.doi.org/" . $row['doi']) . ". Accessed " . $today;
}
else {
$output .= " " . "http://dx.doi.org/" . $row['doi'] . ". Accessed " . $today;
}
}
elseif (!empty($row['url'])) {
// Only add "." if online_citation isn't empty, or else if either year, volume, issue, abbrev_journal or publication isn't empty.
if (!empty($row['online_citation']) or empty($row['online_citation']) and !empty($node->biblio_year) || !empty($node->biblio_volume) || !empty($node->biblio_issue) || !empty($node->biblio_alternate_title) || !empty($node->biblio_secondary_title)) {
$output .= ".";
}
if ($encodeHTML) {
$output .= " " . encodeHTML($row['url']) . ". Accessed " . $today;
}
else {
$output .= " " . $row['url'] . ". Accessed " . $today;
}
}
}
if (!preg_match("/\\. *\$/", $output)) {
$output .= ".";
}
break;
// Book Chapter.
case 101:
// Conference Paper.
case 103:
if (!empty($authors)) {
$output .= '<span class="biblio-authors">';
$output .= $authors;
if (!preg_match("/\\. *\$/", $authors)) {
$output .= ".";
}
$output .= '</span>';
}
// Title.
if (!empty($node->title)) {
if (!empty($authors)) {
$output .= " ";
}
$output .= '"<i>';
$output .= '<span class="biblio-title-ama">';
$url = biblio_get_title_url_info($node);
$output .= l($node->title, $url['link'], $url['options']);
$output .= "</span>";
$output .= '</i>';
if (!preg_match("/[?!.]\$/", $node->title)) {
$output .= ".";
}
$output .= '"';
}
if (!empty($editors)) {
$editor_options = array(
'BetweenAuthorsDelimStandard' => ', ',
'BetweenAuthorsDelimLastAuthor' => ', ',
'AuthorsInitialsDelimFirstAuthor' => ' ',
'AuthorsInitialsDelimStandard' => ' ',
'betweenInitialsDelim' => '',
'initialsBeforeAuthorFirstAuthor' => FALSE,
'initialsBeforeAuthorStandard' => FALSE,
'shortenGivenNames' => TRUE,
'numberOfAuthorsTriggeringEtAl' => 6,
'includeNumberOfAuthors' => 3,
'customStringAfterFirstAuthors' => ' et al.',
'encodeHTML' => TRUE,
);
$editor = theme('biblio_format_authors', array(
'contributors' => $editors,
'options' => $editor_options,
));
$output .= " In: " . $editor . ", ";
// There are at least two editors (separated by ';')
if (count($editors) > 1) {
$output .= "eds";
// there's only one editor (or the editor field is malformed with multiple editors but missing ';' separator[s])
}
else {
$output .= "ed";
}
}
$publication = preg_replace("/[ \r\n]*\\(Eds?:[^\\)\r\n]*\\)/", "", $node->biblio_secondary_title);
// Publication.
if (!empty($publication)) {
if (!preg_match("/[?!.] *\$/", $output)) {
$output .= ".";
}
if (empty($editor)) {
$output .= " In:";
}
// @todo container titles should be formatted in heading caps, however, this doesn't yet work correctly if the publication title contains HTML entities.
$output .= " <i>" . $publication . "</i>";
// $output .= " " . $markupPatternsArray["italic-prefix"] . changeCase("heading", $publication) . $markupPatternsArray["italic-suffix"]; // function 'changeCase()' is defined in 'include.inc.php'.
}
// Volume.
if (!empty($node->biblio_volume)) {
if (!preg_match("/[?!.][ \"" . $markupPatternsArray["italic-suffix"] . "]*\$/", $output)) {
$output .= ".";
}
$output .= " Vol. " . $node->biblio_volume;
}
// Edition.
if (!empty($node->biblio_edition) && !preg_match("/^(1|1st|first|one)( ed\\.?| edition)?\$/i", $node->biblio_edition)) {
if (!preg_match("/[?!.][ \"" . $markupPatternsArray["italic-suffix"] . "]*\$/", $output)) {
$output .= ".";
}
// If the edition field contains a number of up to three digits, we assume it's an edition number (such as "2nd ed.")
if (preg_match("/^\\d{1,3}\$/", $node->biblio_edition)) {
if ($node->biblio_edition == "2") {
$editionSuffix = "nd";
}
elseif ($node->biblio_edition == "3") {
$editionSuffix = "rd";
}
else {
$editionSuffix = "th";
}
}
else {
$editionSuffix = "";
}
if (!preg_match("/( ed\\.?| edition)\$/i", $node->biblio_edition)) {
$editionSuffix .= " ed.";
}
$output .= " " . $node->biblio_edition . $editionSuffix;
}
if (!preg_match("/[?!.][ \"" . $markupPatternsArray["italic-suffix"] . "]*\$/", $output)) {
$output .= ".";
}
// Place.
if (!empty($node->biblio_place_published)) {
$output .= " " . $node->biblio_place_published;
}
// Publisher.
if (!empty($node->biblio_publisher)) {
if (!empty($node->biblio_place_published)) {
$output .= ":";
}
$output .= " " . $node->biblio_publisher;
}
// Year.
if (!empty($node->biblio_year)) {
$output .= "; " . $node->biblio_year;
}
// Pages.
if (!empty($node->biblio_pages)) {
// Function 'formatPageInfo()' is defined in 'cite.inc.php'.
$output .= ":" . theme('biblio_page_number', $node->biblio_pages, $markupPatternsArray["endash"]);
}
// If there's either a full or an abbreviated series title.
if (!empty($node->biblio_alternate_title) or !empty($node->biblio_tertiary_title)) {
if (!preg_match("/[?!.][ \"" . $markupPatternsArray["italic-suffix"] . "]*\$/", $output)) {
$output .= ".";
}
$output .= " ";
if (!empty($node->biblio_alternate_title)) {
// Abbreviated series title.
$output .= $node->biblio_alternate_title;
}
elseif (!empty($node->biblio_tertiary_title)) {
// Full series title.
$output .= $node->biblio_tertiary_title;
}
if (!empty($node->biblio_volume) || !empty($node->biblio_issue)) {
$output .= " ";
}
// Series volume.
if (!empty($node->biblio_volume)) {
$output .= $node->biblio_volume;
}
// Series issue (I'm not really sure if -- for this cite style -- the series issue should be rather omitted here)
if (!empty($node->biblio_issue)) {
// Is it correct to format series issues similar to journal article issues?
$output .= "(" . $node->biblio_issue . ")";
}
}
if (!preg_match("/\\. *\$/", $output)) {
$output .= ".";
}
break;
// All other types.
default:
// @todo
// @code
// if (ereg("[ \r\n]*\(ed\)", $node->author)) // single editor
// $author = $author . ", ed";
// elseif (ereg("[ \r\n]*\(eds\)", $node->author)) // multiple editors
// $author = $author . ", eds";.
// @endcode
// Author.
if (!empty($authors)) {
$output .= '<span class="biblio-authors">';
$output .= $authors;
if (!preg_match("/\\. *\$/", $authors)) {
$output .= ".";
}
$output .= '</span>';
}
// Title.
if (!empty($node->title)) {
if (!empty($authors)) {
$output .= " ";
}
$output .= '<i>';
// @todo book/volume/report/etc titles should be formatted in heading caps, however, this doesn't yet work correctly if the publication title contains HTML entities.
$output .= '<span class="biblio-title-ama">';
$url = biblio_get_title_url_info($node);
$output .= l($node->title, $url['link'], $url['options']);
$output .= "</span>";
$output .= '</i>';
}
// For software, add software label.
if ($node->biblio_type == "Software") {
$output .= " [computer program]";
}
// Volume.
if (!empty($node->biblio_volume) and $node->biblio_type != "Software") {
if (!preg_match("/[?!.][ \"" . $markupPatternsArray["italic-suffix"] . "]*\$/", $output)) {
$output .= ".";
}
$output .= " Vol. " . $node->biblio_volume;
}
// Edition.
if (!empty($node->biblio_edition)) {
if (!preg_match("/[?!.][ \"" . $markupPatternsArray["italic-suffix"] . "]*\$/", $output)) {
$output .= ".";
}
// Software edition (=version)
if ($row['type'] == "Software") {
$output .= " Version " . $node->biblio_edition;
}
elseif (!preg_match("/^(1|1st|first|one)( ed\\.?| edition)?\$/i", $node->biblio_edition)) {
// If the edition field contains a number of up to three digits, we assume it's an edition number (such as "2nd ed.")
if (preg_match("/^\\d{1,3}\$/", $node->biblio_edition)) {
if ($node->biblio_edition == "2") {
$editionSuffix = "nd";
}
elseif ($node->biblio_edition == "3") {
$editionSuffix = "rd";
}
else {
$editionSuffix = "th";
}
}
else {
$editionSuffix = "";
}
if (!preg_match("/( ed\\.?| edition)\$/i", $node->biblio_edition)) {
$editionSuffix .= " ed.";
}
$output .= " " . $node->biblio_edition . $editionSuffix;
}
}
// Editor (if different from author, see note above regarding the check for ' (ed)' or ' (eds)')
if (!empty($editors)) {
$editor_options = array(
'BetweenAuthorsDelimStandard' => ', ',
'BetweenAuthorsDelimLastAuthor' => ', ',
'AuthorsInitialsDelimFirstAuthor' => ' ',
'AuthorsInitialsDelimStandard' => ' ',
'betweenInitialsDelim' => '',
'initialsBeforeAuthorFirstAuthor' => FALSE,
'initialsBeforeAuthorStandard' => FALSE,
'shortenGivenNames' => TRUE,
'numberOfAuthorsTriggeringEtAl' => 6,
'includeNumberOfAuthors' => 3,
'customStringAfterFirstAuthors' => ' et al.',
'encodeHTML' => TRUE,
);
$editor = theme('biblio_format_authors', array(
'contributors' => $editors,
'options' => $editor_options,
));
if (!preg_match("/[?!.][ \"" . $markupPatternsArray["italic-suffix"] . "]*\$/", $output)) {
$output .= ".";
}
$output .= " " . $editor;
// There are at least two editors (separated by ';')
if (count($editors) > 1) {
$output .= ", eds";
// there's only one editor (or the editor field is malformed with multiple editors but missing ';' separator[s])
}
else {
$output .= ", ed";
}
}
// Thesis.
if (!empty($row['thesis'])) {
// @todo do we need to use the term "[dissertation]" instead of "[Ph.D. thesis]", etc? What about other thesis types then?
$output .= " [" . $row['thesis'] . "]";
}
if (!preg_match("/[?!.][ \"" . $markupPatternsArray["italic-suffix"] . "]*\$/", $output)) {
$output .= ".";
}
// Place.
if (!empty($node->biblio_place_published)) {
$output .= " " . $node->biblio_place_published;
}
// Publisher.
if (!empty($node->biblio_publisher)) {
if (!empty($node->biblio_place_published)) {
$output .= ":";
}
$output .= " " . $node->biblio_publisher;
}
$output .= ";";
// For software, volume (=month) and issue (=day) information is printed before the year (similar to newspaper articles)
if ($node->biblio_type == "Software") {
// Volume (=month)
if (!empty($node->biblio_volume)) {
$output .= " " . $node->biblio_volume;
}
// Issue (=day)
if (!empty($node->biblio_issue)) {
$output .= " " . $node->biblio_issue;
}
$output .= ",";
}
// Year.
if (!empty($node->biblio_year)) {
$output .= " " . $node->biblio_year;
}
// If there's either a full or an abbreviated series title.
if (!empty($node->biblio_alternate_title) or !empty($node->biblio_tertiary_title)) {
if (!preg_match("/[?!.][ \"" . $markupPatternsArray["italic-suffix"] . "]*\$/", $output)) {
$output .= ".";
}
$output .= " ";
if (!empty($node->biblio_alternate_title)) {
// Abbreviated series title.
$output .= $node->biblio_alternate_title;
}
elseif (!empty($node->biblio_tertiary_title)) {
// Full series title.
$output .= $node->biblio_tertiary_title;
}
if (!empty($node->biblio_volume) || !empty($node->biblio_issue)) {
$output .= " ";
}
// Series volume.
if (!empty($node->biblio_volume)) {
$output .= $node->biblio_volume;
}
// Series issue (I'm not really sure if -- for this cite style -- the series issue should be rather omitted here)
if (!empty($node->biblio_issue)) {
// Is it correct to format series issues similar to journal article issues?
$output .= "(" . $node->biblio_issue . ")";
}
}
// If ($row['online_publication'] == "yes" || $row['type'] == "Software") // this record refers to an online article, or a computer program/software
// {
// // append an optional string (given in 'online_citation') plus the current date and the DOI (or URL):
//
// $today = date("F j, Y");
//
// if (!empty($row['online_citation'])) // online_citation
// {
// if (!preg_match("/\. *$/", $output)) $output .= ".";
//
// $output .= $row['online_citation'];
// }
//
// if (!empty($row['doi'])) // doi
// {
// if (!preg_match("/\. *$/", $output)) $output .= ".";
//
// if ($encodeHTML)
// $output .= " " . encodeHTML("http://dx.doi.org/" . $row['doi']) . ". Accessed " . $today;
// else
// $output .= " " . "http://dx.doi.org/" . $row['doi'] . ". Accessed " . $today;
// }
// elseif (!empty($row['url'])) // url
// {
// if (!preg_match("/\. *$/", $output)) $output .= ".";
//
// if ($encodeHTML)
// $output .= " " . encodeHTML($row['url']) . ". Accessed " . $today;
// else
// $output .= " " . $row['url'] . ". Accessed " . $today;
// }
//
// }.
if (!preg_match("/\\. *\$/", $output)) {
$output .= ".";
}
break;
}
return filter_xss($output, biblio_get_allowed_tags());
}Functions
Name |
Description |
|---|---|
| biblio_style_ama | |
| biblio_style_ama_author_options | |
| biblio_style_ama_info | Get the style information. |